Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   SOI74_RS05295 Genome accession   NZ_CP139287
Coordinates   1133317..1134126 (-) Length   269 a.a.
NCBI ID   WP_017481716.1    Uniprot ID   A0AAN4MGD2
Organism   Acinetobacter pittii strain 564U     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1128317..1139126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS05280 (SOI74_05280) pilE 1128536..1128961 (-) 426 WP_014207809.1 type IV pilin protein Machinery gene
  SOI74_RS05285 (SOI74_05285) pilY2 1128958..1129440 (-) 483 WP_002116770.1 type IV pilin protein Machinery gene
  SOI74_RS05290 (SOI74_05290) pilY1 1129451..1133305 (-) 3855 WP_032052644.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI74_RS05295 (SOI74_05295) pilX 1133317..1134126 (-) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI74_RS05300 (SOI74_05300) pilW 1134123..1135124 (-) 1002 WP_032052645.1 PilW family protein Machinery gene
  SOI74_RS05305 (SOI74_05305) pilV 1135124..1135684 (-) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  SOI74_RS05310 (SOI74_05310) fimU 1135678..1136151 (-) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI74_RS05315 (SOI74_05315) ispH 1136321..1137271 (-) 951 WP_032006348.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI74_RS05320 (SOI74_05320) gmk 1137394..1138023 (+) 630 WP_005804544.1 guanylate kinase -
  SOI74_RS05325 (SOI74_05325) rpoZ 1138096..1138374 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI74_RS05330 (SOI74_05330) - 1138413..1138567 (+) 155 Protein_1024 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28558.38 Da        Isoelectric Point: 7.7238

>NTDB_id=908794 SOI74_RS05295 WP_017481716.1 1133317..1134126(-) (pilX) [Acinetobacter pittii strain 564U]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=908794 SOI74_RS05295 WP_017481716.1 1133317..1134126(-) (pilX) [Acinetobacter pittii strain 564U]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAATTTTTGTTATAAGCCTGTTTCTACATCAACAAA
TTTTGCTCAGACTAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACGCAACGTATTCGGGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907