Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   SOI74_RS05310 Genome accession   NZ_CP139287
Coordinates   1135678..1136151 (-) Length   157 a.a.
NCBI ID   WP_005067119.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 564U     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1130678..1141151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS05295 (SOI74_05295) pilX 1133317..1134126 (-) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI74_RS05300 (SOI74_05300) pilW 1134123..1135124 (-) 1002 WP_032052645.1 PilW family protein Machinery gene
  SOI74_RS05305 (SOI74_05305) pilV 1135124..1135684 (-) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  SOI74_RS05310 (SOI74_05310) fimU 1135678..1136151 (-) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI74_RS05315 (SOI74_05315) ispH 1136321..1137271 (-) 951 WP_032006348.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI74_RS05320 (SOI74_05320) gmk 1137394..1138023 (+) 630 WP_005804544.1 guanylate kinase -
  SOI74_RS05325 (SOI74_05325) rpoZ 1138096..1138374 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI74_RS05330 (SOI74_05330) - 1138413..1138567 (+) 155 Protein_1024 hypothetical protein -
  SOI74_RS05335 (SOI74_05335) spoT 1138583..1140688 (+) 2106 WP_002116807.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16912.60 Da        Isoelectric Point: 7.7942

>NTDB_id=908797 SOI74_RS05310 WP_005067119.1 1135678..1136151(-) (fimU) [Acinetobacter pittii strain 564U]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=908797 SOI74_RS05310 WP_005067119.1 1135678..1136151(-) (fimU) [Acinetobacter pittii strain 564U]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTAGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCGTTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACTAATATTACCCAAGACACACTTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

88.535

100

0.885