Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   SOI74_RS05300 Genome accession   NZ_CP139287
Coordinates   1134123..1135124 (-) Length   333 a.a.
NCBI ID   WP_032052645.1    Uniprot ID   A0AAN4MG03
Organism   Acinetobacter pittii strain 564U     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1129123..1140124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS05290 (SOI74_05290) pilY1 1129451..1133305 (-) 3855 WP_032052644.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI74_RS05295 (SOI74_05295) pilX 1133317..1134126 (-) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI74_RS05300 (SOI74_05300) pilW 1134123..1135124 (-) 1002 WP_032052645.1 PilW family protein Machinery gene
  SOI74_RS05305 (SOI74_05305) pilV 1135124..1135684 (-) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  SOI74_RS05310 (SOI74_05310) fimU 1135678..1136151 (-) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI74_RS05315 (SOI74_05315) ispH 1136321..1137271 (-) 951 WP_032006348.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI74_RS05320 (SOI74_05320) gmk 1137394..1138023 (+) 630 WP_005804544.1 guanylate kinase -
  SOI74_RS05325 (SOI74_05325) rpoZ 1138096..1138374 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI74_RS05330 (SOI74_05330) - 1138413..1138567 (+) 155 Protein_1024 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35784.47 Da        Isoelectric Point: 6.6395

>NTDB_id=908795 SOI74_RS05300 WP_032052645.1 1134123..1135124(-) (pilW) [Acinetobacter pittii strain 564U]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSAVSNHWKGLSNIQNTSNAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSTVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=908795 SOI74_RS05300 WP_032052645.1 1134123..1135124(-) (pilW) [Acinetobacter pittii strain 564U]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTAGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGCTTGGAATATATTGCCCGTGATATACGCCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACGACCCCTTGGGGCGGTGTTGTATTAACTGGTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACCTATATTGCTGACACATTACTTAGTCGTGGTGCAGGTGATACGGTGAGTGCTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACACTTCAAATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACGAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGACTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGATTATGCACTTGCATGTGATGCAAATACTCCCTCTACTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.985

100

0.85