Detailed information NTG0908792

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABRO91_RS05430
• Genome accession: NZ_CP158344
• Coordinates: 1125071..1126063 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 116333
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1120071..1131063

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRO91_RS05400 (ABRO91_05400)	ispD	1120132..1120842 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABRO91_RS05405 (ABRO91_05405)	ispF	1120842..1121321 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABRO91_RS05410 (ABRO91_05410)	truD	1121318..1122367 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABRO91_RS05415 (ABRO91_05415)	surE	1122348..1123109 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABRO91_RS05420 (ABRO91_05420)	pcm	1123103..1123729 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABRO91_RS05425 (ABRO91_05425)	nlpD	1123914..1125008 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABRO91_RS05430 (ABRO91_05430)	rpoS	1125071..1126063 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABRO91_RS05435 (ABRO91_05435)	ygbN	1126157..1127521 (-)	1365	WP_000104441.1	GntP family transporter	-
ABRO91_RS05440 (ABRO91_05440)	ygbM	1127610..1128386 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ABRO91_RS05445 (ABRO91_05445)	ygbL	1128391..1129029 (-)	639	WP_001278994.1	aldolase	-
ABRO91_RS05450 (ABRO91_05450)	otnK	1129026..1130288 (-)	1263	WP_072649794.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=908792 ABRO91_RS05430 WP_000081550.1 1125071..1126063(+) (rpoS) [Escherichia coli strain 116333]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=908792 ABRO91_RS05430 WP_000081550.1 1125071..1126063(+) (rpoS) [Escherichia coli strain 116333]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715