Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   SOI74_RS05285 Genome accession   NZ_CP139287
Coordinates   1128958..1129440 (-) Length   160 a.a.
NCBI ID   WP_002116770.1    Uniprot ID   A0A009RUX0
Organism   Acinetobacter pittii strain 564U     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1123958..1134440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS05250 (SOI74_05250) - 1124042..1125073 (+) 1032 WP_017481713.1 lipase secretion chaperone -
  SOI74_RS05255 (SOI74_05255) lip 1125189..1126130 (+) 942 WP_080612940.1 lipase family alpha/beta hydrolase -
  SOI74_RS05260 (SOI74_05260) rplS 1126183..1126551 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  SOI74_RS05265 (SOI74_05265) trmD 1126771..1127526 (-) 756 WP_005067137.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOI74_RS05270 (SOI74_05270) rimM 1127569..1128117 (-) 549 WP_002116736.1 ribosome maturation factor RimM -
  SOI74_RS05275 (SOI74_05275) rpsP 1128137..1128388 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  SOI74_RS05280 (SOI74_05280) pilE 1128536..1128961 (-) 426 WP_014207809.1 type IV pilin protein Machinery gene
  SOI74_RS05285 (SOI74_05285) pilY2 1128958..1129440 (-) 483 WP_002116770.1 type IV pilin protein Machinery gene
  SOI74_RS05290 (SOI74_05290) pilY1 1129451..1133305 (-) 3855 WP_032052644.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI74_RS05295 (SOI74_05295) pilX 1133317..1134126 (-) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17520.76 Da        Isoelectric Point: 8.4721

>NTDB_id=908792 SOI74_RS05285 WP_002116770.1 1128958..1129440(-) (pilY2) [Acinetobacter pittii strain 564U]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=908792 SOI74_RS05285 WP_002116770.1 1128958..1129440(-) (pilY2) [Acinetobacter pittii strain 564U]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGCTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCGGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.678

100

0.45