Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SOI77_RS18165 Genome accession   NZ_CP139275
Coordinates   3825360..3826847 (+) Length   495 a.a.
NCBI ID   WP_320561878.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG138     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3820360..3831847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS18140 (SOI77_18140) ribD 3821274..3822359 (-) 1086 WP_320561877.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  SOI77_RS18145 (SOI77_18145) nrdR 3822375..3822833 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  SOI77_RS18150 (SOI77_18150) amtB 3822995..3824392 (-) 1398 WP_017385861.1 ammonium transporter -
  SOI77_RS18155 (SOI77_18155) glnK 3824450..3824788 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  SOI77_RS18160 (SOI77_18160) - 3825067..3825294 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  SOI77_RS18165 (SOI77_18165) comM 3825360..3826847 (+) 1488 WP_320561878.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SOI77_RS18170 (SOI77_18170) - 3826863..3828296 (-) 1434 WP_320561879.1 PLP-dependent aminotransferase family protein -
  SOI77_RS18175 (SOI77_18175) - 3828408..3829184 (+) 777 WP_320561880.1 aldolase -
  SOI77_RS18180 (SOI77_18180) - 3829200..3830078 (+) 879 WP_320561881.1 dihydrodipicolinate synthase family protein -
  SOI77_RS18185 (SOI77_18185) - 3830120..3830932 (-) 813 WP_017385855.1 TorF family putative porin -
  SOI77_RS18190 (SOI77_18190) - 3830971..3831159 (-) 189 WP_017385854.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54499.65 Da        Isoelectric Point: 7.7209

>NTDB_id=908638 SOI77_RS18165 WP_320561878.1 3825360..3826847(+) (comM) [Acinetobacter pittii strain HCG138]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGMKLLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTSHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYKQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=908638 SOI77_RS18165 WP_320561878.1 3825360..3826847(+) (comM) [Acinetobacter pittii strain HCG138]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTCTGATTGAAGTTGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACCATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAAAGATTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGGTCACGT
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGTCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGGCCAGTGTCAGGCACGTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATGAAATTACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACATCACATACCTTTGGACAGCGCCCATTTCGGGCGCC
CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GAGTTTTGTTTTTAGATGAACTCCCTGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGCTATCAAAACCGTATATCGGGGC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAACGCCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCTCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.605

100

0.507
  comM Glaesserella parasuis strain SC1401

50.2

100

0.507
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Haemophilus influenzae Rd KW20

48.697

100

0.491
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467