Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SOI77_RS01580 Genome accession   NZ_CP139275
Coordinates   335277..336056 (+) Length   259 a.a.
NCBI ID   WP_320561997.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG138     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330277..341056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS01565 (SOI77_01565) ponA 330858..333419 (-) 2562 WP_320561996.1 penicillin-binding protein PBP1a -
  SOI77_RS01570 (SOI77_01570) pilM 333581..334639 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI77_RS01575 (SOI77_01575) pilN 334639..335280 (+) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  SOI77_RS01580 (SOI77_01580) pilO 335277..336056 (+) 780 WP_320561997.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI77_RS01585 (SOI77_01585) pilP 336068..336595 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  SOI77_RS01590 (SOI77_01590) pilQ 336658..338784 (+) 2127 WP_320561998.1 type IV pilus secretin PilQ family protein Machinery gene
  SOI77_RS01595 (SOI77_01595) aroK 338796..339365 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI77_RS01600 (SOI77_01600) aroB 339394..340476 (+) 1083 WP_005067096.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29478.66 Da        Isoelectric Point: 6.5010

>NTDB_id=908598 SOI77_RS01580 WP_320561997.1 335277..336056(+) (pilO) [Acinetobacter pittii strain HCG138]
MSPDELHELSLKQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVETAPVKDGKSDIPVLNYSIKAKTYRYMGAVENQNNSDPQVINGESQI
NASDSRNVHIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=908598 SOI77_RS01580 WP_320561997.1 335277..336056(+) (pilO) [Acinetobacter pittii strain HCG138]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAAAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTCGACATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTACTGGCTTTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAGCTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
GATGCATGATTTTATTGTTGAAACTGCTCCTGTTAAGGATGGTAAGTCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CAAAAACTTATCGCTATATGGGTGCGGTTGAAAACCAAAATAATAGTGATCCTCAAGTGATAAATGGTGAAAGTCAGATA
AATGCCTCCGATAGCCGTAATGTACATATTCCTTCTATAAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.286

86.486

0.772
  comO Acinetobacter baylyi ADP1

70.815

89.961

0.637