Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SOI77_RS01575 Genome accession   NZ_CP139275
Coordinates   334639..335280 (+) Length   213 a.a.
NCBI ID   WP_032004890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG138     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329639..340280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS01555 (SOI77_01555) - 329683..330015 (+) 333 WP_002116981.1 hypothetical protein -
  SOI77_RS01560 (SOI77_01560) rrmA 330018..330842 (+) 825 WP_081310304.1 putative RNA methyltransferase -
  SOI77_RS01565 (SOI77_01565) ponA 330858..333419 (-) 2562 WP_320561996.1 penicillin-binding protein PBP1a -
  SOI77_RS01570 (SOI77_01570) pilM 333581..334639 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI77_RS01575 (SOI77_01575) pilN 334639..335280 (+) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  SOI77_RS01580 (SOI77_01580) pilO 335277..336056 (+) 780 WP_320561997.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI77_RS01585 (SOI77_01585) pilP 336068..336595 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  SOI77_RS01590 (SOI77_01590) pilQ 336658..338784 (+) 2127 WP_320561998.1 type IV pilus secretin PilQ family protein Machinery gene
  SOI77_RS01595 (SOI77_01595) aroK 338796..339365 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23907.33 Da        Isoelectric Point: 5.4186

>NTDB_id=908597 SOI77_RS01575 WP_032004890.1 334639..335280(+) (pilN) [Acinetobacter pittii strain HCG138]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=908597 SOI77_RS01575 WP_032004890.1 334639..335280(+) (pilN) [Acinetobacter pittii strain HCG138]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685