Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SOI77_RS01585 Genome accession   NZ_CP139275
Coordinates   336068..336595 (+) Length   175 a.a.
NCBI ID   WP_017481730.1    Uniprot ID   A0A010ITU2
Organism   Acinetobacter pittii strain HCG138     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331068..341595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS01570 (SOI77_01570) pilM 333581..334639 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI77_RS01575 (SOI77_01575) pilN 334639..335280 (+) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  SOI77_RS01580 (SOI77_01580) pilO 335277..336056 (+) 780 WP_320561997.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI77_RS01585 (SOI77_01585) pilP 336068..336595 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  SOI77_RS01590 (SOI77_01590) pilQ 336658..338784 (+) 2127 WP_320561998.1 type IV pilus secretin PilQ family protein Machinery gene
  SOI77_RS01595 (SOI77_01595) aroK 338796..339365 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI77_RS01600 (SOI77_01600) aroB 339394..340476 (+) 1083 WP_005067096.1 3-dehydroquinate synthase -
  SOI77_RS01605 (SOI77_01605) - 340493..341362 (+) 870 WP_130121779.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19253.42 Da        Isoelectric Point: 9.7299

>NTDB_id=908599 SOI77_RS01585 WP_017481730.1 336068..336595(+) (pilP) [Acinetobacter pittii strain HCG138]
MKLKKILLSLGIGLVLVGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=908599 SOI77_RS01585 WP_017481730.1 336068..336595(+) (pilP) [Acinetobacter pittii strain HCG138]
ATGAAACTAAAGAAAATTTTACTTTCTCTAGGGATAGGCTTGGTTTTGGTTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCGGCACCTGTTTTTACACCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTGAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTGCAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATTTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A010ITU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88

100

0.88
  comL Acinetobacter baylyi ADP1

73.964

96.571

0.714