NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	SOI73_RS14410	Genome accession	NZ_CP139262
Coordinates	3020978..3022465 (+)	Length	495 a.a.
NCBI ID	WP_002121164.1	Uniprot ID	A0A8I1H7H2
Organism	Acinetobacter pittii strain HUM1
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3015978..3027465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOI73_RS14385 (SOI73_14385)	ribD	3016932..3018017 (-)	1086	WP_016802732.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-
SOI73_RS14390 (SOI73_14390)	nrdR	3018033..3018491 (-)	459	WP_000543541.1	transcriptional regulator NrdR	-
SOI73_RS14395 (SOI73_14395)	amtB	3018616..3020010 (-)	1395	WP_005079483.1	ammonium transporter	-
SOI73_RS14400 (SOI73_14400)	glnK	3020068..3020406 (-)	339	WP_000780326.1	P-II family nitrogen regulator	-
SOI73_RS14405 (SOI73_14405)	-	3020685..3020912 (+)	228	WP_002121136.1	accessory factor UbiK family protein	-
SOI73_RS14410 (SOI73_14410)	comM	3020978..3022465 (+)	1488	WP_002121164.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
SOI73_RS14415 (SOI73_14415)	yieF	3022569..3023114 (+)	546	WP_196257532.1	NADPH-dependent FMN reductase	-
SOI73_RS14420 (SOI73_14420)	mocR	3023139..3024572 (-)	1434	WP_002121228.1	PLP-dependent aminotransferase family protein	-
SOI73_RS14425 (SOI73_14425)	-	3024684..3025460 (+)	777	WP_320134527.1	aldolase	-
SOI73_RS14430 (SOI73_14430)	-	3025476..3026354 (+)	879	WP_002121240.1	dihydrodipicolinate synthase family protein	-
SOI73_RS14435 (SOI73_14435)	-	3026396..3027208 (-)	813	WP_002121202.1	TorF family putative porin	-
SOI73_RS14440 (SOI73_14440)	-	3027247..3027435 (-)	189	WP_002121272.1	hypothetical protein	-

Sequence

Protein

Download Length: 495 a.a. Molecular weight: 54466.52 Da Isoelectric Point: 7.3646

                                >NTDB_id=908479 SOI73_RS14410 WP_002121164.1 3020978..3022465(+) (comM) [Acinetobacter pittii strain HUM1]

MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR

LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL

KEVCDHFLGIKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN

QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE

IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE

DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ

SPHLTEALSYRGNHS

Nucleotide

Download Length: 1488 bp

                                >NTDB_id=908479 SOI73_RS14410 WP_002121164.1 3020978..3022465(+) (comM) [Acinetobacter pittii strain HUM1]

ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAAGTTGAGGTACATGTGAGTCA

AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA

TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT

CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT

TGGTGAATTAGCTTTAGATGGTCATGTAAGGCCAGTGTCAGGCACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC

ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA

AAAGAAGTTTGTGATCATTTCTTGGGCATAAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA

TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC

TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCCCTTTCTAAT

CAAGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGACAGCGTCCATTTCGGGCGCC

CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG

GCGTTTTGTTTTTAGATGAACTCCCTGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA

ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG

TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGTTATCAAAACCGTATATCGGGAC

CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTGCTGAA

GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT

TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAGCAACGTTTGA

ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGAGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA

AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	50.806	100	0.509
comM	Glaesserella parasuis strain SC1401	50.1	100	0.505
comM	Legionella pneumophila str. Paris	49.398	100	0.497
comM	Legionella pneumophila strain ERS1305867	49.398	100	0.497
comM	Haemophilus influenzae Rd KW20	48.898	100	0.493
comM	Vibrio campbellii strain DS40M4	47.677	100	0.477
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.123	100	0.469

Detailed information NTG0908479