Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SOI71_RS17355 Genome accession   NZ_CP139251
Coordinates   3649783..3651270 (+) Length   495 a.a.
NCBI ID   WP_017481904.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR53     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3644783..3656270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS17330 (SOI71_17320) ribD 3645700..3646785 (-) 1086 WP_033851249.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  SOI71_RS17335 (SOI71_17325) nrdR 3646801..3647259 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  SOI71_RS17340 (SOI71_17330) amtB 3647421..3648815 (-) 1395 WP_005079483.1 ammonium transporter -
  SOI71_RS17345 (SOI71_17335) glnK 3648873..3649211 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  SOI71_RS17350 (SOI71_17340) - 3649490..3649717 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  SOI71_RS17355 (SOI71_17345) comM 3649783..3651270 (+) 1488 WP_017481904.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SOI71_RS17360 (SOI71_17350) - 3651285..3652718 (-) 1434 WP_104075789.1 PLP-dependent aminotransferase family protein -
  SOI71_RS17365 (SOI71_17355) - 3652830..3653606 (+) 777 WP_032005818.1 aldolase -
  SOI71_RS17370 (SOI71_17360) - 3653622..3654500 (+) 879 WP_104075788.1 dihydrodipicolinate synthase family protein -
  SOI71_RS17375 (SOI71_17365) - 3654543..3655364 (-) 822 WP_205668769.1 TorF family putative porin -
  SOI71_RS17380 (SOI71_17370) - 3655403..3655591 (-) 189 WP_017385854.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54493.61 Da        Isoelectric Point: 7.5364

>NTDB_id=908355 SOI71_RS17355 WP_017481904.1 3649783..3651270(+) (comM) [Acinetobacter pittii strain MCR53]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALNGHVRPVPGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGMKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=908355 SOI71_RS17355 WP_017481904.1 3649783..3651270(+) (comM) [Acinetobacter pittii strain MCR53]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTCTGATTGAAGTTGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGCGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAAATGGCCATGTAAGGCCAGTGCCAGGCACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAATAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATGAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCGTCACGCCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAAGAGACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GCGTTTTGTTTTTAGATGAACTCCCTGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGCTATCAAAACCGTATATCGGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAGATGGCTCAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGTGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.509
  comM Glaesserella parasuis strain SC1401

50.1

100

0.505
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Haemophilus influenzae Rd KW20

48.898

100

0.493
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467