Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   SOL79_RS09065 Genome accession   NZ_CP139210
Coordinates   2067396..2068100 (+) Length   234 a.a.
NCBI ID   WP_135027260.1    Uniprot ID   -
Organism   Streptococcus sp. VEG1o     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2062396..2073100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOL79_RS09050 (SOL79_09035) thrS 2062742..2064688 (+) 1947 WP_135027264.1 threonine--tRNA ligase -
  SOL79_RS09055 (SOL79_09040) - 2065510..2066550 (+) 1041 WP_135027262.1 DUF3114 domain-containing protein -
  SOL79_RS09060 (SOL79_09045) - 2067199..2067345 (-) 147 WP_167752604.1 hypothetical protein -
  SOL79_RS09065 (SOL79_09050) micA 2067396..2068100 (+) 705 WP_135027260.1 response regulator YycF Regulator
  SOL79_RS09070 (SOL79_09055) micB 2068093..2069445 (+) 1353 WP_135027258.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SOL79_RS09075 (SOL79_09060) vicX 2069452..2070255 (+) 804 WP_135027255.1 MBL fold metallo-hydrolase Regulator
  SOL79_RS09080 (SOL79_09065) - 2070255..2070425 (+) 171 WP_167752603.1 hypothetical protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26853.88 Da        Isoelectric Point: 4.9925

>NTDB_id=908030 SOL79_RS09065 WP_135027260.1 2067396..2068100(+) (micA) [Streptococcus sp. VEG1o]
MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALAVFEAEFPDIVILDLMLPEIDGLEVARTIRKTSNVPILMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSELAETQVELDTTGTPELTIRDLIIIPDAFVAKKHGKELELT
HREFELLHHLAKHLGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYIKGND

Nucleotide


Download         Length: 705 bp        

>NTDB_id=908030 SOL79_RS09065 WP_135027260.1 2067396..2068100(+) (micA) [Streptococcus sp. VEG1o]
ATGAAAAAAATCTTGATTGTAGACGATGAAAAGCCGATTTCGGATATTATCAAATTTAATATGACACGAGAGGGGTATGA
GGTGGTGACGGCTTTTGATGGTCGAGAAGCCTTGGCGGTATTTGAGGCGGAATTCCCAGATATCGTGATTTTGGACTTGA
TGCTTCCAGAGATTGATGGACTTGAAGTGGCACGGACCATTCGCAAGACCAGTAACGTGCCGATTTTGATGCTGTCTGCT
AAGGATAGCGAATTTGACAAGGTGATTGGTCTTGAAATTGGAGCAGATGATTATGTAACCAAACCCTTTTCGAATCGAGA
ATTGCAAGCTCGGGTCAAAGCCTTGTTGCGTCGCAGTGAATTGGCTGAAACGCAAGTTGAGCTGGATACGACTGGTACAC
CTGAGTTGACCATTCGGGATTTGATAATTATTCCAGATGCCTTTGTGGCTAAAAAGCATGGTAAGGAGTTGGAGTTGACC
CACCGTGAATTTGAGTTGCTCCACCATTTAGCTAAGCATTTGGGGCAGGTCATGACACGGGAGCATTTGCTTGAAACTGT
ATGGGGTTACGATTACTTCGGAGATGTGCGGACTGTTGACGTGACTGTTCGTCGCTTGCGTGAGAAAATTGAAGATACAC
CGAGCCGTCCGGAATATATCTTGACACGGCGTGGCGTAGGATATTATATAAAAGGAAATGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

83.333

100

0.833
  vicR Streptococcus mutans UA159

80.426

100

0.808
  covR Streptococcus salivarius strain HSISS4

43.29

98.718

0.427
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.043

98.291

0.423
  scnR Streptococcus mutans UA159

36.797

98.718

0.363