Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   SOL79_RS06270 Genome accession   NZ_CP139210
Coordinates   1419683..1420882 (-) Length   399 a.a.
NCBI ID   WP_135027832.1    Uniprot ID   -
Organism   Streptococcus sp. VEG1o     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1414683..1425882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOL79_RS06250 (SOL79_06240) - 1414728..1415636 (-) 909 WP_135027844.1 diacylglycerol/lipid kinase family protein -
  SOL79_RS06255 (SOL79_06245) dnaN 1416018..1417154 (-) 1137 WP_135027841.1 DNA polymerase III subunit beta -
  SOL79_RS06260 (SOL79_06250) dnaA 1417303..1418661 (-) 1359 WP_135027837.1 chromosomal replication initiator protein DnaA -
  SOL79_RS06265 (SOL79_06255) spo0J 1418863..1419627 (-) 765 WP_135027834.1 ParB/RepB/Spo0J family partition protein Regulator
  SOL79_RS06270 (SOL79_06260) htrA 1419683..1420882 (-) 1200 WP_135027832.1 S1C family serine protease Regulator
  SOL79_RS06275 (SOL79_06265) rlmH 1421057..1421536 (+) 480 WP_135027828.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SOL79_RS06280 (SOL79_06270) - 1421561..1422232 (+) 672 WP_135027825.1 YoaK family protein -

Sequence


Protein


Download         Length: 399 a.a.        Molecular weight: 42235.54 Da        Isoelectric Point: 4.7602

>NTDB_id=908012 SOL79_RS06270 WP_135027832.1 1419683..1420882(-) (htrA) [Streptococcus sp. VEG1o]
MKKFLKVLLLLFIGFIGGLAGTLATPLLQTNKQVTQIVETKKENEETTVSKVQYNNENSTTSAVEKVQNAVVSVINYQQP
RDNGYRSILEESGNSDDLAVAGEGSGVIYKKTDQFAYLVTNTHVIAGAEKIDIQLASGEKVEGELIGSDTYADIAVIKIT
ADKVKNVAEFADSDKIKVGETAIAIGSPLGSIYANTVTQGIVSSLSRTVTSKAEDGQTISTNAIQTDTAINPGNSGGPLI
NIQGQVIGITSSKITSSSNSAAGVAVEGMGFAIPANDAVNIINQLEKNGKVIRPALGIKMANLSNLSTTQRQKAGIEDDS
LKSGIVVLSTQKGLPADGQLEQYDVITKIDGETVETISDLQSALYKHTVGDTMSITYSRRGKEKTVDIKLTNSTEDLTN

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=908012 SOL79_RS06270 WP_135027832.1 1419683..1420882(-) (htrA) [Streptococcus sp. VEG1o]
ATGAAAAAATTCTTAAAAGTATTACTCTTATTATTCATTGGGTTTATAGGAGGATTAGCAGGAACACTTGCCACACCTTT
GCTCCAGACGAATAAGCAAGTCACTCAAATTGTTGAAACCAAAAAAGAAAATGAAGAGACAACTGTTAGTAAGGTACAGT
ACAATAATGAAAATTCAACAACATCAGCTGTTGAGAAAGTACAAAATGCAGTAGTATCCGTCATTAATTATCAACAACCG
CGTGATAATGGCTATCGTTCTATTTTAGAAGAGAGTGGCAATTCAGATGATCTGGCTGTAGCAGGAGAAGGTTCTGGAGT
TATTTATAAAAAAACAGACCAATTTGCCTATCTCGTCACCAATACCCACGTGATTGCAGGAGCTGAAAAAATTGATATTC
AACTAGCTTCGGGTGAAAAAGTGGAAGGGGAGTTGATTGGTTCAGATACTTATGCAGATATTGCCGTGATTAAAATTACA
GCTGATAAGGTTAAAAATGTTGCTGAATTTGCAGATTCTGACAAGATTAAGGTCGGAGAAACAGCGATTGCCATTGGTAG
CCCACTCGGTAGTATCTACGCAAACACAGTAACACAAGGAATCGTTTCTAGTCTCAGCCGTACAGTCACTTCAAAAGCAG
AAGATGGTCAAACTATTTCCACCAATGCCATTCAAACCGATACAGCGATTAACCCTGGAAATTCAGGCGGCCCACTAATC
AATATTCAAGGACAAGTCATCGGAATTACCTCTAGTAAAATCACTTCTAGCTCCAATTCAGCAGCTGGAGTTGCTGTAGA
AGGAATGGGATTTGCTATTCCAGCAAATGATGCAGTGAATATCATCAATCAACTAGAGAAAAATGGAAAAGTCATCCGTC
CAGCACTGGGGATTAAAATGGCGAATTTAAGCAATCTTTCTACCACACAACGACAAAAAGCAGGTATTGAAGATGATAGC
TTGAAATCAGGTATTGTGGTTCTTTCTACTCAAAAAGGCTTACCAGCAGACGGTCAATTAGAACAATATGATGTTATCAC
CAAAATTGATGGCGAAACAGTCGAAACAATTAGTGATTTACAAAGCGCCCTCTATAAACATACTGTTGGTGATACGATGT
CCATTACCTACTCTCGCCGTGGAAAAGAAAAAACAGTTGACATCAAATTAACCAATTCAACAGAGGATCTCACAAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

61.25

100

0.614

  htrA Streptococcus mutans UA159

60.349

100

0.607

  htrA Streptococcus pneumoniae Rx1

57.935

99.499

0.576

  htrA Streptococcus pneumoniae D39

57.935

99.499

0.576

  htrA Streptococcus pneumoniae R6

57.935

99.499

0.576

  htrA Streptococcus pneumoniae TIGR4

57.935

99.499

0.576

  htrA Streptococcus mitis NCTC 12261

57.935

99.499

0.576