Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SK095_RS15810 Genome accession   NZ_CP139195
Coordinates   3358700..3360196 (-) Length   498 a.a.
NCBI ID   WP_201485288.1    Uniprot ID   A0A8H8XN12
Organism   Pseudomonas sp. AN-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3353700..3365196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK095_RS15800 (SK095_15800) rep 3354437..3356446 (-) 2010 WP_320546815.1 DNA helicase Rep -
  SK095_RS15805 (SK095_15805) - 3356543..3358504 (-) 1962 WP_320546816.1 choline BCCT transporter BetT -
  SK095_RS15810 (SK095_15810) comM 3358700..3360196 (-) 1497 WP_201485288.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SK095_RS15815 (SK095_15815) - 3360231..3360491 (-) 261 WP_136491709.1 accessory factor UbiK family protein -
  SK095_RS15820 (SK095_15820) glnK 3360982..3361320 (+) 339 WP_136491710.1 P-II family nitrogen regulator -
  SK095_RS15825 (SK095_15825) - 3361374..3362693 (+) 1320 WP_136491711.1 ammonium transporter -
  SK095_RS15830 (SK095_15830) - 3362768..3364021 (+) 1254 WP_136491712.1 ammonium transporter -
  SK095_RS15835 (SK095_15835) sutA 3364243..3364554 (+) 312 WP_136491713.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52537.50 Da        Isoelectric Point: 8.3376

>NTDB_id=907816 SK095_RS15810 WP_201485288.1 3358700..3360196(-) (comM) [Pseudomonas sp. AN-1]
MSLAIVHSRAQLGIDAPAVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSAIQSCGFDYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPAASLENLECLGELALSGALRAVRGVLPAALAARAAGRALLVPRANAEEAALVSGLTLYAAEHL
LEVAAHLAGHSPLAPWTARGLPPPAPIRGDIAEVQGQLAAKRALLVAAAGRHNLLLSGAPGTGKTLLASRLPGLLPPLTE
AEALEVTAIHSVAGLAPQGGWPQRPFRQPHHSASGPALVGGGTRPKPGEISLAHHGVLFLDELPEFPRHVLDVLRQPLES
GEIVIARAQDKLRFPARFQLVAAMNPCPCGYLGDPEQRCRCTPEQVQRYRARLSGPLLDRIDLHLAVRREPTRLHASGEG
PDSATLARQVAAAQALQFERQGCANAHLDLPGLQAHCALAEADRLWLEGAGERLRLSLRALHRVLKVARTLADLEGLADI
RRAQLAEALQYRASGEPG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=907816 SK095_RS15810 WP_201485288.1 3358700..3360196(-) (comM) [Pseudomonas sp. AN-1]
ATGTCCCTCGCCATCGTCCACAGCCGTGCCCAGCTCGGCATCGACGCCCCCGCCGTCAGCGTCGAGGCCCACCTGGCCAA
CGGCCTGCCCTCGCTGACCCTGGTCGGTCTGCCGGAAACCGCCGTGCGCGAAAGCAAGGACCGCGTGCGCAGCGCGATCC
AGAGTTGCGGCTTCGACTACCCCAGCCGGCGCATCACCCTCAACCTGGCCCCCGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGGCCATCGCCCTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGCCGCCAGCCTGGAAAACCTCGAGTGCCT
CGGCGAGCTGGCCCTCTCCGGTGCCCTGCGCGCCGTGCGCGGCGTGCTGCCGGCGGCGCTGGCCGCCCGCGCCGCCGGGC
GCGCCCTGCTGGTGCCGCGCGCCAACGCCGAGGAGGCCGCGCTGGTCTCGGGACTGACCCTGTACGCCGCCGAGCACCTG
CTGGAAGTGGCCGCCCACCTGGCCGGGCACAGCCCGCTGGCGCCCTGGACCGCCCGCGGCCTGCCGCCCCCTGCACCGAT
ACGGGGCGACATCGCCGAGGTGCAGGGCCAGCTGGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCCGGCACAATC
TCCTGCTGAGCGGAGCGCCCGGCACCGGCAAGACCCTGCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGCCGCTGACCGAG
GCCGAGGCGCTGGAGGTGACCGCCATCCACTCGGTGGCCGGCCTGGCGCCGCAGGGCGGCTGGCCGCAGCGGCCGTTCCG
CCAGCCGCACCACAGCGCCTCCGGGCCGGCGCTGGTCGGCGGCGGCACGCGCCCCAAGCCCGGCGAGATCAGCCTGGCCC
ACCATGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTTTCCCCGCCACGTCCTCGACGTGCTGCGCCAGCCGCTGGAGAGC
GGCGAGATCGTCATCGCCCGCGCCCAGGACAAGCTGCGCTTTCCCGCACGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCGTGCGGCTACCTCGGCGATCCCGAGCAGCGCTGCCGCTGCACCCCGGAGCAGGTGCAGCGCTACCGCGCCCGGCTGT
CCGGCCCGTTGCTCGATCGCATCGACCTGCACCTGGCCGTGCGCCGCGAGCCGACCCGCCTGCACGCCAGCGGCGAGGGA
CCGGACAGCGCCACGCTGGCCCGGCAGGTGGCCGCCGCTCAGGCGCTCCAGTTCGAGCGCCAGGGCTGCGCCAACGCCCA
CCTCGACCTGCCCGGCCTGCAGGCCCACTGCGCCCTCGCCGAGGCCGACCGCCTGTGGCTGGAGGGCGCCGGCGAGCGCC
TGCGCCTGTCGCTGCGCGCCCTGCACCGCGTGCTCAAGGTGGCGCGCACCCTGGCCGACCTGGAAGGCCTCGCCGACATC
CGGCGCGCCCAGCTGGCCGAGGCGCTGCAGTACCGGGCGAGCGGCGAGCCCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.09

100

0.554
  comM Vibrio campbellii strain DS40M4

54.309

100

0.544
  comM Vibrio cholerae strain A1552

54.637

99.598

0.544
  comM Glaesserella parasuis strain SC1401

53.2

100

0.534
  comM Legionella pneumophila str. Paris

49.008

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.008

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.468