Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SK090_RS20190 Genome accession   NZ_CP139189
Coordinates   4462064..4463578 (+) Length   504 a.a.
NCBI ID   WP_320545551.1    Uniprot ID   -
Organism   Aeromonas veronii strain FS12001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4457064..4468578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK090_RS20175 - 4458801..4459745 (-) 945 WP_064338981.1 branched-chain amino acid transaminase -
  SK090_RS20180 ilvM 4459758..4460036 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  SK090_RS20185 ilvG 4460033..4461679 (-) 1647 WP_320545550.1 acetolactate synthase 2 catalytic subunit -
  SK090_RS20190 comM 4462064..4463578 (+) 1515 WP_320545551.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SK090_RS20195 - 4463705..4464604 (+) 900 WP_236356451.1 acyltransferase -
  SK090_RS20200 - 4464611..4465576 (+) 966 WP_320545552.1 acyltransferase -
  SK090_RS20205 - 4465501..4466007 (-) 507 WP_320545553.1 DUF523 domain-containing protein -
  SK090_RS20210 - 4466004..4466654 (-) 651 WP_005339607.1 NrtR DNA-binding winged helix domain-containing protein -
  SK090_RS20215 - 4466729..4467364 (+) 636 WP_005357452.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54592.47 Da        Isoelectric Point: 7.4492

>NTDB_id=907696 SK090_RS20190 WP_320545551.1 4462064..4463578(+) (comM) [Aeromonas veronii strain FS12001]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDADFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=907696 SK090_RS20190 WP_320545551.1 4462064..4463578(+) (comM) [Aeromonas veronii strain FS12001]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCAGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
GGGGGAGTTGGCCCTGACCGGCGAAATTCGTCCCGTGCTCGGGGTACTGCCTGCCGTACTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAAGCTTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACAGCTTGGCTGGCGGGCCAGTACGAACTGCCCCTGCCGGATCCCCAAAACGCGGAGAGCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCACCTGGCACCGGCAAGAGCATGCTGGCGAGCCGATTGCCCGGCATTCTGCCGCCGCTCAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACTCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCCGCAGTAGCGCTGGTGGGCGGCGGCAGCCACCCAAGGCCCGGCGAAATATCGTTGGCCC
ACAACGGGGTTCTGTTTCTGGATGAATTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACAGTTGAGGTGCCGCTGCTGCCCAAGGGGAGCCTTACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTGCTGGCGGCGCGAGAGCGCATGCTGAGTCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGACTTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCACTCGGCTACCGGGCCATGGACCGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

62.948

99.603

0.627
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464