Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABMY55_RS04655 Genome accession   NZ_CP158143
Coordinates   974787..975323 (-) Length   178 a.a.
NCBI ID   WP_033557595.1    Uniprot ID   -
Organism   Escherichia coli strain FDN-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 969787..980323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABMY55_RS04635 (ABMY55_04635) soxR 971515..971979 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  ABMY55_RS04640 (ABMY55_04640) soxS 972065..972388 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ABMY55_RS04645 (ABMY55_04645) pdeC 972391..973977 (-) 1587 WP_000019539.1 c-di-GMP phosphodiesterase PdeC -
  ABMY55_RS04650 (ABMY55_04650) yjcB 974407..974688 (+) 282 WP_001295689.1 YjcB family protein -
  ABMY55_RS04655 (ABMY55_04655) ssb 974787..975323 (-) 537 WP_033557595.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABMY55_RS04660 (ABMY55_04660) uvrA 975577..978399 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  ABMY55_RS04665 (ABMY55_04665) yjbR 978434..978790 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ABMY55_RS04670 (ABMY55_04670) yjbQ 978794..979210 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABMY55_RS04675 (ABMY55_04675) aphA 979321..980034 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19003.05 Da        Isoelectric Point: 5.2358

>NTDB_id=907595 ABMY55_RS04655 WP_033557595.1 974787..975323(-) (ssb) [Escherichia coli strain FDN-11]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVVSEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=907595 ABMY55_RS04655 WP_033557595.1 974787..975323(-) (ssb) [Escherichia coli strain FDN-11]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGTCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.747
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.59
  ssb Neisseria meningitidis MC58

47.514

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.365