Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R0L47_RS19950 Genome accession   NZ_CP139173
Coordinates   4293669..4295195 (-) Length   508 a.a.
NCBI ID   WP_137742454.1    Uniprot ID   -
Organism   Pectobacterium polonicum strain LMG 31077     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4288669..4300195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0L47_RS19925 (R0L47_19840) ytfR 4288823..4290343 (+) 1521 WP_137742458.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  R0L47_RS19930 (R0L47_19845) ytfT 4290330..4291340 (+) 1011 WP_137742457.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  R0L47_RS19935 (R0L47_19850) yjfF 4291340..4292302 (+) 963 WP_137742456.1 galactofuranose ABC transporter, permease protein YjfF -
  R0L47_RS19940 (R0L47_19855) hdfR 4292325..4293152 (-) 828 WP_137742455.1 HTH-type transcriptional regulator HdfR -
  R0L47_RS19945 (R0L47_19860) - 4293273..4293611 (+) 339 WP_014701822.1 DUF413 domain-containing protein -
  R0L47_RS19950 (R0L47_19865) comM 4293669..4295195 (-) 1527 WP_137742454.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R0L47_RS19955 (R0L47_19870) - 4295162..4295395 (-) 234 WP_137742453.1 hypothetical protein -
  R0L47_RS19960 (R0L47_19875) ilvL 4295601..4295699 (+) 99 WP_071531109.1 ilv operon leader peptide -
  R0L47_RS19965 (R0L47_19880) ilvG 4295840..4297486 (+) 1647 WP_137742452.1 acetolactate synthase 2 catalytic subunit -
  R0L47_RS19970 (R0L47_19885) ilvM 4297544..4297804 (+) 261 WP_005969103.1 acetolactate synthase 2 small subunit -
  R0L47_RS19975 (R0L47_19890) - 4297829..4298755 (+) 927 WP_137742451.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55404.08 Da        Isoelectric Point: 6.8206

>NTDB_id=907539 R0L47_RS19950 WP_137742454.1 4293669..4295195(-) (comM) [Pectobacterium polonicum strain LMG 31077]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSTITPVTLAGEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLVNIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGENSATIRERVLIARQIQLKRANKINALLTSREIEKHCALEPPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=907539 R0L47_RS19950 WP_137742454.1 4293669..4295195(-) (comM) [Pectobacterium polonicum strain LMG 31077]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTACATCGAAGTTCACATCAGCAG
CGGGCTGCCCGCTTTAACGCTGGTAGGATTACCAGAAACCACCGTGAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCAAAGCGCATCACGGTCAATCTCGCTCCCGCAGACCTGCCAAAAGAGGGGGGACGC
TACGATCTACCGATTGCTCTGGCGATTCTAGCGGCATCAGAACAAATCGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
CGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTTAATGGCGCGATTCCTGCCGCCTTGGAAGCCATAAAAGCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGCTGATGGCTGGTCATCTG
CTAGAGGTGTGTGCTTTTCTCAGTGGAGAAGAGGAACTGCTCAGCTGTTCCACTATCACACCCGTTACACTGGCAGGGGA
AGATACGCTAGACCTGAAGGATATTATCGGTCAGGAGCAAGCTAAACGCGCATTGGAAATCGCGGCGGCAGGTGGCCACA
ATCTGCTATTGCTAGGGCCACCGGGAACAGGGAAAACGATGCTGGCGAGTCGGCTAGGCAATCTGATGCCGCCATTGAGC
GATGAAGAAGCGTTAGAAAGCGCCGCTATCAACAGCCTGGTCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
CTTCAGAGCACCTCACCATAGTTCTTCTATGGCGGCACTCGTAGGCGGGGGCTCGCTGCCCAAACCCGGAGAAATCTCAC
TCGCCCACAACGGTGTGCTGTTTTTGGATGAATTACCAGAGTTTGAGCGACGCGTCTTAGACTCGCTGCGAGAACCTCTG
GAATCTGGTGAAATTATCATTTCCCGTACCCGAGCCAAAGTGTGCTATCCGGCACGCGTTCAGCTCGTCGCCGCGATGAA
TCCCAGCCCGTCAGGGCATTATCAAGGTATTCATAACCGATTGCCGGCCCAACAGATACTGCGCTATCTCAGTAAGCTCT
CCGGTCCCTTCTTGGATCGCTTTGACCTTTCGATCGAAGTTCCTTTACTGCCACCTGGCGTGTTATCTCAGCAACATTAT
CAAGGGGAAAATAGCGCGACGATTCGCGAACGCGTACTGATCGCACGACAGATACAGCTGAAGCGGGCAAATAAAATTAA
CGCACTGCTAACTTCACGCGAAATAGAAAAACACTGTGCGTTAGAGCCACCTGATGCGGCTTACCTGGAAGAAGTGATGA
ACAAACTTGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCACGCACGATCGCTGACCTTGGCGATCGGGAC
AACATTGAGAGAAAGCATCTTGCCGAAGCGCTGAGCTACCGTTGTATGGATCGATTACTCATCCAGCTCCATAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.427

99.606

0.642
  comM Glaesserella parasuis strain SC1401

63.583

100

0.636
  comM Vibrio cholerae strain A1552

63.817

99.016

0.632
  comM Vibrio campbellii strain DS40M4

63.221

99.016

0.626
  comM Legionella pneumophila str. Paris

51.107

97.835

0.5
  comM Legionella pneumophila strain ERS1305867

51.107

97.835

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.036

99.606

0.469