Detailed information NTG0907539

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABMY59_RS06940
• Genome accession: NZ_CP158140
• Coordinates: 1437851..1438843 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDN-9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1432851..1443843

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABMY59_RS06910 (ABMY59_06910)	ispD	1432912..1433622 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABMY59_RS06915 (ABMY59_06915)	ispF	1433622..1434101 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABMY59_RS06920 (ABMY59_06920)	truD	1434098..1435147 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABMY59_RS06925 (ABMY59_06925)	surE	1435128..1435889 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABMY59_RS06930 (ABMY59_06930)	pcm	1435883..1436509 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABMY59_RS06935 (ABMY59_06935)	nlpD	1436694..1437788 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABMY59_RS06940 (ABMY59_06940)	rpoS	1437851..1438843 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABMY59_RS06945 (ABMY59_06945)	ygbN	1438937..1440301 (-)	1365	WP_000104441.1	GntP family transporter	-
ABMY59_RS06950 (ABMY59_06950)	ygbM	1440390..1441166 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ABMY59_RS06955 (ABMY59_06955)	ygbL	1441171..1441809 (-)	639	WP_001278994.1	aldolase	-
ABMY59_RS06960 (ABMY59_06960)	otnK	1441901..1443067 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=907539 ABMY59_RS06940 WP_000081550.1 1437851..1438843(+) (rpoS) [Escherichia coli strain FDN-9]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=907539 ABMY59_RS06940 WP_000081550.1 1437851..1438843(+) (rpoS) [Escherichia coli strain FDN-9]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715