Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SIM97_RS00930 Genome accession   NZ_CP139172
Coordinates   220107..221633 (+) Length   508 a.a.
NCBI ID   WP_129708914.1    Uniprot ID   -
Organism   Pectobacterium zantedeschiae strain CFBP 1357     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 215107..226633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIM97_RS00910 (SIM97_00905) - 216556..217482 (-) 927 WP_129708908.1 branched-chain amino acid transaminase -
  SIM97_RS00915 (SIM97_00910) ilvM 217508..217768 (-) 261 WP_005969103.1 acetolactate synthase 2 small subunit -
  SIM97_RS00920 (SIM97_00915) ilvG 217826..219472 (-) 1647 WP_129708911.1 acetolactate synthase 2 catalytic subunit -
  SIM97_RS00925 (SIM97_00920) ilvL 219613..219711 (-) 99 WP_071531109.1 ilv operon leader peptide -
  SIM97_RS00930 (SIM97_00925) comM 220107..221633 (+) 1527 WP_129708914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SIM97_RS00935 (SIM97_00930) - 221691..222029 (-) 339 WP_048262976.1 DUF413 domain-containing protein -
  SIM97_RS00940 (SIM97_00935) hdfR 222150..222977 (+) 828 WP_129708917.1 HTH-type transcriptional regulator HdfR -
  SIM97_RS00945 (SIM97_00940) yjfF 222999..223961 (-) 963 WP_039286283.1 galactofuranose ABC transporter, permease protein YjfF -
  SIM97_RS00950 (SIM97_00945) ytfT 223961..224971 (-) 1011 WP_129708920.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  SIM97_RS00955 (SIM97_00950) ytfR 224958..226478 (-) 1521 WP_129708922.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55527.27 Da        Isoelectric Point: 7.5280

>NTDB_id=907496 SIM97_RS00930 WP_129708914.1 220107..221633(+) (comM) [Pectobacterium zantedeschiae strain CFBP 1357]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLNRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LQVCAFLSGEEKLLSCSDMTPVPQSGEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DDEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCKLEMADAAYLEDVMNKLGLSVRAWHRILKVARTIADLGNRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=907496 SIM97_RS00930 WP_129708914.1 220107..221633(+) (comM) [Pectobacterium zantedeschiae strain CFBP 1357]
ATGTCATTGGCAGTTACCTACACTCGGGCAATGATTGGCGTACAAGCGCCTGATGTTTACATCGAAGTTCACATCAGCAG
TGGATTACCAGCATTAACGCTGGTGGGGTTGCCAGAAACCACCGTCAAAGAAGCGCGCGATCGCGTACGCAGCGCACTTA
TCAATTGCGGGTTTACGTTTCCGGCAAAGCGTATCACGGTCAACCTCGCACCAGCAGACTTGCCCAAAGAAGGAGGACGC
TACGATCTGCCCATTGCTCTGGCGATTCTGGCAGCGTCAGAACAAATCGATGGTGAAAAGCTAAACCGCTACGAATTTCT
CGGCGAACTCGGCCTGTCTGGCACGTTACGTGGCGTTAATGGCGCGATTCCAGCCGCATTGGAAGCCATAAAATCAGGCC
GTCAGCTTATCCTGCCAGATGACAATAAACGAGAAATGACGCTGATACCGCAGGGAGAAGCGCTAATGGCGGGGCATCTG
TTGCAGGTGTGTGCTTTTCTCAGCGGAGAAGAGAAACTGCTCAGTTGCTCTGATATGACACCCGTTCCGCAGTCTGGGGA
AGATACGCTCGACTTGAAAGATATTATCGGTCAGGAGCAAGCTAAACGCGCGTTGGAAATCGCGGCTGCAGGTGGCCACA
ATCTGCTATTGCTAGGGCCACCGGGAACAGGGAAAACCATGCTGGCGAGCCGATTAGGCAATCTAATGCCGCCATTGAGC
GATGACGAAGCGCTGGAAAGCGCCGCCATCAATAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGGCC
CTTCAGAGCGCCTCACCATAGCTCTTCCATGGCTGCACTCGTCGGTGGAGGATCGCTGCCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGTGTACTTTTCCTGGATGAATTACCGGAGTTTGAGCGGCGCGTTCTGGACTCACTACGAGAGCCTCTG
GAATCCGGTGAAATTATCATTTCCCGCACCCGCGCTAAAGTATGCTACCCGGCACGCGTTCAGCTTGTCGCCGCGATGAA
CCCCAGTCCGTCAGGTCATTATCAGGGCATTCATAACCGCTTACCTGCACAACAGATATTACGCTATCTCAGTAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCTATCGAAGTCCCTTTGCTACCACCAGGGGTGTTATCTCAACAACATTAC
CAAGGTGAAAGCAGCGCGACGATTCGCGAGCGCGTGCTGATCGCAAGGCAAATACAGTTGAAGCGGGCAAATAAAATCAA
TGCGCTGCTAACTTCACGCGAAATAGAAAAACACTGCAAATTGGAGATGGCCGATGCAGCCTATCTGGAAGACGTGATGA
ATAAACTTGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCCCGCACGATCGCTGACCTCGGTAATCGGGAC
AATATCGAGAGAAAACATCTTGCCGAAGCGCTGAGCTACCGCTGTATGGATCGATTACTCATCCAACTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.822

99.606

0.646
  comM Glaesserella parasuis strain SC1401

63.035

100

0.638
  comM Vibrio cholerae strain A1552

64.016

99.016

0.634
  comM Vibrio campbellii strain DS40M4

62.451

99.606

0.622
  comM Legionella pneumophila str. Paris

50.501

98.228

0.496
  comM Legionella pneumophila strain ERS1305867

50.501

98.228

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.109

100

0.467