Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SFA35_RS24995 Genome accession   NZ_CP139141
Coordinates   5570403..5571896 (+) Length   497 a.a.
NCBI ID   WP_320573797.1    Uniprot ID   -
Organism   Pseudomonas sp. HR96     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5565403..5576896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFA35_RS24955 (SFA35_24955) - 5565495..5565920 (-) 426 WP_320573784.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SFA35_RS24960 (SFA35_24960) - 5566062..5567429 (-) 1368 WP_320573786.1 ammonium transporter -
  SFA35_RS24965 (SFA35_24965) glnK 5567469..5567807 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  SFA35_RS24970 (SFA35_24970) - 5568237..5568515 (+) 279 WP_320573788.1 accessory factor UbiK family protein -
  SFA35_RS24975 (SFA35_24975) - 5568585..5569508 (+) 924 WP_320573790.1 LysR substrate-binding domain-containing protein -
  SFA35_RS24980 (SFA35_24980) - 5569570..5569797 (-) 228 WP_320573792.1 hypothetical protein -
  SFA35_RS24985 (SFA35_24985) - 5569826..5569984 (-) 159 WP_320573793.1 PIN domain-containing protein -
  SFA35_RS24990 (SFA35_24990) - 5569981..5570223 (-) 243 WP_320573795.1 FitA-like ribbon-helix-helix domain-containing protein -
  SFA35_RS24995 (SFA35_24995) comM 5570403..5571896 (+) 1494 WP_320573797.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SFA35_RS25000 (SFA35_25000) - 5572030..5572290 (-) 261 WP_320573799.1 DUF3077 domain-containing protein -
  SFA35_RS25005 (SFA35_25005) - 5573126..5574556 (+) 1431 WP_320573801.1 mechanosensitive ion channel family protein -
  SFA35_RS25010 (SFA35_25010) - 5574696..5575982 (-) 1287 WP_320573804.1 FAD-binding oxidoreductase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52871.75 Da        Isoelectric Point: 7.3785

>NTDB_id=907383 SFA35_RS24995 WP_320573797.1 5570403..5571896(+) (comM) [Pseudomonas sp. HR96]
MTLAIVHSRAQVGVGAPAVTVEAHLANGLPALTMVGLPEASVKESKDRVRSAILNSGLDFPARRITLSLAPADLPKDGGR
FDLAIALGILAGSGQLPASALLEVECLGELALSGAVRPVQGVLPAALAAREAGRALIVPRDNAEEASLAFGLVVYAADHL
LELVAHFNAHTAMSPYSADGLLLVSKPYPDLAEVQGQVAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLNE
SEALEVAAIQSVASFTPLKHWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GEIVIARARDKIRFPARFQLVAAMNPCPCGYLGEPSGRCQCSTDQIQRYRNKLSGPLLDRIDLHLTVARETTALTPVAQP
GDDTHTAAARVAAARDLQQQRQGCANAFLDLPGLRRHCKLSTEDEQWLETACERLTLSLRAAHRLLKVARTLADLEQVER
IGRGHVAEALQYRPTGQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=907383 SFA35_RS24995 WP_320573797.1 5570403..5571896(+) (comM) [Pseudomonas sp. HR96]
ATGACCCTCGCCATCGTCCACAGCCGCGCCCAGGTAGGCGTCGGTGCCCCTGCCGTCACCGTCGAGGCGCATCTGGCCAA
CGGCTTGCCGGCGCTGACCATGGTCGGCCTGCCGGAAGCTTCGGTGAAGGAAAGCAAGGACCGCGTGCGCAGTGCCATCC
TCAACTCCGGGCTGGATTTTCCGGCGCGCCGCATCACCCTGAGCCTGGCGCCGGCGGACCTGCCCAAGGACGGTGGGCGC
TTCGATCTGGCGATTGCCCTGGGCATCCTGGCCGGCAGCGGACAGCTGCCGGCCTCGGCGCTGCTGGAAGTCGAGTGCCT
CGGCGAGCTGGCCCTGTCGGGCGCCGTGCGCCCGGTGCAAGGCGTGCTGCCCGCCGCCCTCGCTGCACGCGAGGCCGGCA
GGGCGCTGATCGTGCCGCGCGACAATGCCGAAGAAGCCTCGCTGGCCTTCGGCCTGGTGGTCTACGCCGCTGACCATCTG
CTGGAGCTGGTCGCCCACTTCAACGCCCACACCGCCATGAGCCCCTACAGCGCCGACGGCCTGCTGCTGGTGAGCAAACC
CTACCCGGACCTTGCTGAAGTGCAAGGCCAGGTGGCCGCCAAACGCGCGCTGCTGGTGGCCGCAGCCGGTGCGCACAACC
TGCTATTCAGCGGCCCGCCGGGCACGGGCAAGACCTTGCTCGCCAGCCGCTTGCCTGGCTTGCTGCCGCCGCTCAACGAG
AGCGAGGCCCTAGAGGTGGCGGCGATTCAATCGGTGGCCAGTTTCACGCCGCTCAAGCACTGGCCGCAGCGACCGTTTCG
CCATCCCCACCACTCGGCGTCGGGGGCCGCGCTGGTGGGCGGCGGCAGCCGACCCCAGCCCGGAGAAATCACCCTCGCCC
ACCACGGTGTGCTGTTTCTCGACGAGCTGCCGGAGTTCGACCGCAAGGTCCTGGAGGTGCTGCGCGAGCCCCTGGAAAGC
GGCGAAATCGTCATCGCCCGGGCCCGCGACAAAATCCGCTTCCCCGCGCGCTTCCAGCTGGTGGCCGCCATGAACCCTTG
CCCCTGCGGCTACCTCGGCGAACCCAGCGGCCGCTGCCAGTGCAGCACCGATCAAATCCAGCGCTACCGCAATAAACTCT
CCGGCCCCCTGCTCGATCGCATCGACCTGCACCTGACCGTCGCTCGCGAGACCACCGCCCTCACCCCCGTCGCCCAACCC
GGCGACGACACCCACACCGCCGCCGCCCGAGTCGCCGCTGCCCGTGACCTGCAGCAACAACGCCAAGGCTGCGCCAACGC
CTTCCTCGACCTGCCCGGCCTGCGCCGGCACTGCAAGTTATCCACAGAAGACGAGCAATGGCTGGAAACCGCCTGCGAGC
GCCTGACCCTGTCGCTGCGGGCTGCCCATCGGTTGTTGAAAGTGGCAAGAACCCTGGCGGATCTGGAGCAGGTAGAGAGG
ATTGGGCGCGGGCATGTGGCGGAGGCCTTGCAGTATCGGCCTACGGGGCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.77

100

0.545
  comM Glaesserella parasuis strain SC1401

53.586

100

0.541
  comM Vibrio campbellii strain DS40M4

54.141

99.598

0.539
  comM Vibrio cholerae strain A1552

53.535

99.598

0.533
  comM Legionella pneumophila str. Paris

48.185

99.799

0.481
  comM Legionella pneumophila strain ERS1305867

48.185

99.799

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.149

100

0.459