NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	SH576_RS31855	Genome accession	NZ_CP139036
Coordinates	6715100..6716593 (+)	Length	497 a.a.
NCBI ID	WP_023088684.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain MAS152
Function	DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6710100..6721593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SH576_RS31825 (SH576_31800)	-	6710221..6711135 (-)	915	WP_023100055.1	fimbrial protein	-
SH576_RS31830 (SH576_31805)	sutA	6711572..6711889 (-)	318	WP_003096440.1	transcriptional regulator SutA	-
SH576_RS31835 (SH576_31810)	-	6711967..6712392 (-)	426	WP_003096441.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
SH576_RS31840 (SH576_31815)	-	6712653..6713981 (-)	1329	WP_003109815.1	ammonium transporter	-
SH576_RS31845 (SH576_31820)	glnK	6714021..6714359 (-)	339	WP_003096476.1	P-II family nitrogen regulator	-
SH576_RS31850 (SH576_31825)	-	6714799..6715059 (+)	261	WP_003096478.1	accessory factor UbiK family protein	-
SH576_RS31855 (SH576_31830)	comM	6715100..6716593 (+)	1494	WP_023088684.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
SH576_RS31860 (SH576_31835)	betT	6716718..6718703 (+)	1986	WP_003096496.1	choline BCCT transporter BetT	-
SH576_RS31865 (SH576_31840)	pchP	6718746..6719795 (-)	1050	WP_003110458.1	phosphorylcholine phosphatase	-
SH576_RS31870 (SH576_31845)	-	6719946..6720863 (-)	918	WP_033991411.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

Download Length: 497 a.a. Molecular weight: 53052.95 Da Isoelectric Point: 7.9587

                                >NTDB_id=906899 SH576_RS31855 WP_023088684.1 6715100..6716593(+) (comM) [Pseudomonas aeruginosa strain MAS152]

MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR

FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL

LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE

DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES

GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE

TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI

ERRHLAEALQYRATTST

Nucleotide

Download Length: 1494 bp

                                >NTDB_id=906899 SH576_RS31855 WP_023088684.1 6715100..6716593(+) (comM) [Pseudomonas aeruginosa strain MAS152]

ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA

CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC

TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC

TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT

CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC

GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG

CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC

TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC

TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG

GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG

CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC

ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC

GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG

TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT

CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA

ACCGCTACCGCCGAGGTCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA

TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC

TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC

GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio campbellii strain DS40M4	56.653	99.799	0.565
comM	Haemophilus influenzae Rd KW20	55.206	100	0.565
comM	Vibrio cholerae strain A1552	56.25	99.799	0.561
comM	Glaesserella parasuis strain SC1401	55.09	100	0.555
comM	Legionella pneumophila str. Paris	50.1	100	0.503
comM	Legionella pneumophila strain ERS1305867	50.1	100	0.503
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.957	100	0.469

Detailed information NTG0906899