Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SH589_RS24770 Genome accession   NZ_CP139028
Coordinates   5153982..5155502 (+) Length   506 a.a.
NCBI ID   WP_047077113.1    Uniprot ID   -
Organism   Klebsiella aerogenes strain KA04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5148982..5160502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH589_RS24750 (SH589_24755) - 5150539..5151468 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  SH589_RS24755 (SH589_24760) ilvM 5151488..5151745 (-) 258 WP_015368897.1 acetolactate synthase 2 small subunit -
  SH589_RS24760 (SH589_24765) ilvG 5151742..5153388 (-) 1647 WP_015368898.1 acetolactate synthase 2 catalytic subunit -
  SH589_RS24765 (SH589_24770) ilvL 5153529..5153627 (-) 99 WP_001311244.1 ilv operon leader peptide -
  SH589_RS24770 (SH589_24775) comM 5153982..5155502 (+) 1521 WP_047077113.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SH589_RS24775 (SH589_24780) - 5155526..5155864 (-) 339 WP_015368901.1 DUF413 domain-containing protein -
  SH589_RS24780 (SH589_24785) hdfR 5155983..5156804 (+) 822 WP_015703960.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55052.36 Da        Isoelectric Point: 7.3770

>NTDB_id=906858 SH589_RS24770 WP_047077113.1 5153982..5155502(+) (comM) [Klebsiella aerogenes strain KA04]
MSLAIVYTRAALGVSAPLITVEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYSFPAKKITINLAPADLPKEGGR
YDLPIALALLVASQQLAAPKLNQYEFIGELALTGALRGVPGAISSAMEAIKVGRQIVVAGDNAEEVGLINGNECLIAGHL
QEVCAFLEGKHTLQPPTGEITAGEDDYDDLGDVIGQQQGKRALEIVAAGGHNLLLMGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVNAHYVTRQWRRRPFRAPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GKIHLSRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRATPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSRGGVGE
ERSAIIRLRVFAARDRQLARQNKLNAQLDSGEIKVWCKLKEDDAIWLEQTLSLLGLSIRAWQRLLKVARTIADLNEDRDI
ERHHLQEALSYRAIDRMLNHLQTLMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=906858 SH589_RS24770 WP_047077113.1 5153982..5155502(+) (comM) [Klebsiella aerogenes strain KA04]
ATGTCACTCGCAATTGTCTATACCCGCGCGGCGCTCGGGGTCAGCGCGCCGCTAATTACCGTCGAAGTCCATATCAGCAA
CGGACTCCCTGGTTTGACGATGGTCGGCCTGCCGGAAACCACGGTAAAGGAAGCCCGCGATCGGGTACGTAGCGCCATTA
TTAACAGCGGCTACAGCTTTCCGGCAAAGAAGATAACCATAAACCTTGCCCCAGCCGATCTGCCGAAAGAGGGCGGGAGA
TATGATTTACCTATCGCTCTCGCGCTCCTGGTCGCTTCGCAGCAGCTTGCCGCCCCGAAACTTAATCAGTATGAGTTTAT
TGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCTGGGGCAATATCCAGCGCTATGGAAGCGATAAAAGTCGGGA
GGCAGATTGTCGTTGCTGGAGATAACGCCGAAGAGGTCGGCTTGATTAACGGCAATGAGTGCCTTATAGCAGGGCACCTG
CAGGAAGTCTGTGCGTTTCTGGAAGGGAAACATACTCTGCAGCCGCCGACTGGTGAAATAACTGCGGGAGAGGACGATTA
TGACGATCTCGGCGATGTCATTGGCCAACAGCAGGGAAAACGCGCGCTGGAGATAGTCGCAGCTGGCGGTCACAATTTAC
TTTTGATGGGTCCACCGGGTACAGGGAAGACGATGCTCGCCAGCCGTTTGCCGGGGCTTTTACCGCCACTAAGCAACCAG
GAAGCGCTGGAAAGTGCGGCTATCCTCAGCCTCGTCAATGCTCATTACGTTACGCGTCAGTGGCGTCGGCGGCCTTTTCG
CGCCCCTCACCACAGCGCTTCGCTAACGGCGATGGTCGGCGGCGGCTCAATCCCTGCCCCTGGGGAGATCTCCCTGGCGC
ATAACGGTATTCTGTTTCTTGATGAACTACCTGAATTCGAGCGTCGGGTTCTGGATGCACTACGAGAGCCCATTGAATCA
GGAAAAATTCATCTTTCCCGCACTCGGGCTAAGATTGACTATCCTGCGCGATTTCAGTTGATTGCCGCCATGAATCCCAG
CCCAACAGGACATTACCAGGGTCAGCATAATCGGGCCACACCGGAACAGACCCTGCGCTACCTGGGCCGATTGTCAGGGC
CATTTCTCGACCGCTTCGATCTCTCGCTTGAGATTCCACTCCCTCCACCGGGCGTATTAAGCCGGGGTGGCGTTGGCGAA
GAGCGAAGCGCCATCATTCGTCTACGGGTATTCGCGGCGCGCGACAGACAGCTCGCACGGCAGAATAAACTTAATGCACA
ACTGGACAGCGGGGAGATAAAAGTCTGGTGCAAGCTGAAAGAAGACGACGCGATATGGCTGGAACAGACGCTCTCACTAT
TAGGGCTTTCAATCCGCGCATGGCAACGTTTACTGAAAGTTGCGCGTACTATCGCCGATCTTAATGAGGATAGGGATATC
GAACGTCATCATTTGCAGGAGGCGCTAAGCTACCGGGCTATCGACCGTATGTTAAATCACCTGCAGACGCTAATGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.079

100

0.601
  comM Vibrio campbellii strain DS40M4

59.802

99.802

0.597
  comM Glaesserella parasuis strain SC1401

58.203

100

0.589
  comM Haemophilus influenzae Rd KW20

58.546

100

0.589
  comM Legionella pneumophila str. Paris

49.799

98.419

0.49
  comM Legionella pneumophila strain ERS1305867

49.799

98.419

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.291

100

0.445