Detailed information NTG0906829

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: SHB59_RS29480
• Genome accession: NZ_CP139026
• Coordinates: 6516179..6517672 (+)
• Length: 497 a.a.
• NCBI ID: WP_320448914.1
• Uniprot ID: -
• Organism: Pseudomonas sp. S1Bt23
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 6511179..6522672

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SHB59_RS29450 (SHB59_29450)	-	6511730..6512434 (+)	705	WP_085532870.1	HAD family hydrolase	-
SHB59_RS29455 (SHB59_29455)	sutA	6512539..6512862 (-)	324	WP_007926654.1	transcriptional regulator SutA	-
SHB59_RS29460 (SHB59_29460)	-	6512965..6513390 (-)	426	WP_007926650.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
SHB59_RS29465 (SHB59_29465)	-	6513602..6514939 (-)	1338	WP_007926649.1	ammonium transporter	-
SHB59_RS29470 (SHB59_29470)	glnK	6514975..6515313 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
SHB59_RS29475 (SHB59_29475)	-	6515730..6515990 (+)	261	WP_087087570.1	accessory factor UbiK family protein	-
SHB59_RS29480 (SHB59_29480)	comM	6516179..6517672 (+)	1494	WP_320448914.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
SHB59_RS29485 (SHB59_29485)	-	6517679..6518893 (-)	1215	WP_123572266.1	aldose 1-epimerase family protein	-
SHB59_RS29490 (SHB59_29490)	-	6519000..6519575 (-)	576	WP_085532858.1	TetR/AcrR family transcriptional regulator	-
SHB59_RS29495 (SHB59_29495)	-	6519690..6520616 (+)	927	WP_192814732.1	ABC transporter six-transmembrane domain-containing protein	-
SHB59_RS29500 (SHB59_29500)	-	6520621..6521592 (-)	972	WP_320448915.1	Ca2+-dependent phosphoinositide-specific phospholipase C	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 53377.34 Da
• Isoelectric Point: 8.2657

>NTDB_id=906829 SHB59_RS29480 WP_320448914.1 6516179..6517672(+) (comM) [Pseudomonas sp. S1Bt23]
MSLAIVHSRAQTGVQAPAVSVEVHLANGLPALTLVGLPEAAVKESKDRVRSAILNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLALADVECLGELALSGAVRPVRGVLPAALAARQAGRTLMVPRANAEEACLASGLKVIAVEHL
LEAVAHFNGHTPIEPYVSDGLLYQNRPYPDLNEVQGQLAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLEE
QEALEVAAIQSVTSHTPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GQIVIARARDRVHFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARESTALNPKPQA
GDNTAQAAALVARARERQQRRQGCANAFLDLPGLRRHCQLSTADERWLETACERLTLSLRAAHRLLKVARTLADLEQAEQ
ISREHLAEALQYRPAAS

Nucleotide

• Length: 1494 bp

>NTDB_id=906829 SHB59_RS29480 WP_320448914.1 6516179..6517672(+) (comM) [Pseudomonas sp. S1Bt23]
ATGTCTCTGGCCATTGTCCACAGCCGTGCCCAGACCGGCGTGCAAGCGCCGGCCGTGTCGGTCGAAGTCCATCTGGCCAA
CGGCCTGCCGGCCCTGACCCTGGTGGGCCTGCCCGAAGCGGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGTGCCATTC
TCAATGCCGGCTTCGATTTTCCAGCCCGGCGCATCACCCTCAACCTCGCCCCGGCCGACCTGCCCAAGGACGGCGGGCGC
TTCGATCTGGCCATTGCCCTGGGCATTCTCGCCGCCAGCGTGCAGGTGCCGACACTGGCCCTGGCGGACGTCGAATGCCT
GGGCGAACTGGCGCTTTCCGGCGCGGTTCGCCCGGTGCGCGGTGTGCTGCCGGCGGCCCTGGCCGCGCGCCAGGCCGGAC
GCACGCTGATGGTGCCGCGCGCCAATGCCGAGGAAGCCTGCCTGGCGTCGGGACTGAAGGTGATTGCCGTCGAGCACTTG
CTGGAAGCCGTTGCGCATTTCAACGGCCATACACCGATCGAACCCTATGTTTCGGACGGTCTGCTCTACCAGAACCGGCC
CTACCCCGACCTGAATGAAGTACAGGGCCAGCTGGCCGCCAAACGCGCGCTGCTGGTAGCCGCGGCCGGCGCGCACAACC
TGCTGTTCAGTGGTCCGCCGGGCACCGGCAAGACCTTGCTGGCCAGCCGCCTGCCCGGCCTGTTGCCGCCGCTGGAGGAG
CAGGAAGCCCTGGAAGTGGCCGCCATTCAGTCGGTCACCAGCCATACTCCGCTGAGCCATTGGCCGCAGCGACCGTTTCG
CCAGCCGCACCACTCTGCGTCAGGGCCAGCCCTGGTGGGTGGAGGCTCGAAACCACAACCCGGGGAAATCACCCTGGCCC
ACCACGGTGTGCTGTTTCTCGATGAGTTGCCGGAATTCGATCGCAAGGTATTGGAGGTGCTGCGCGAGCCGCTGGAGTCT
GGGCAGATCGTCATCGCCCGGGCTCGCGACCGGGTGCATTTTCCGGCGCGTTTCCAGCTGGTGGCGGCGATGAACCCCTG
TCCCTGTGGATATCTTGGCGAACCCAGTGGCCGCTGCCGCTGCACCCCGGAGCAGATCCAGCGTTATCGCAACAAACTCT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCCCGGGAAAGCACCGCCCTCAACCCCAAGCCCCAGGCT
GGGGATAACACCGCGCAAGCCGCGGCCCTGGTGGCCCGCGCCAGGGAGCGGCAACAACGGCGCCAGGGTTGCGCCAATGC
TTTTCTCGACCTGCCGGGCCTGCGCCGGCATTGCCAGTTATCCACAGCCGACGAGCGCTGGCTGGAAACCGCCTGCGAAC
GCCTGACCCTGTCCCTGCGCGCCGCCCACCGCCTGCTCAAGGTCGCCCGTACCCTGGCGGACCTCGAGCAGGCCGAGCAG
ATCAGCCGCGAGCACCTGGCCGAAGCGCTGCAATACCGGCCGGCCGCGAGTTGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-493)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-391)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	55.556	99.598	0.553
comM	Vibrio cholerae strain A1552	55.556	99.598	0.553
comM	Glaesserella parasuis strain SC1401	54.4	100	0.547
comM	Haemophilus influenzae Rd KW20	54.4	100	0.547
comM	Legionella pneumophila str. Paris	49.395	99.799	0.493
comM	Legionella pneumophila strain ERS1305867	49.395	99.799	0.493
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.23	100	0.469