Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | REH59_RS27860 | Genome accession | NZ_CP139018 |
| Coordinates | 6100771..6102261 (+) | Length | 496 a.a. |
| NCBI ID | WP_108079038.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. BO3-4 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 6086657..6146299 | 6100771..6102261 | within | 0 |
Gene organization within MGE regions
Location: 6086657..6146299
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| REH59_RS27785 (REH59_27785) | rnk | 6088715..6089125 (-) | 411 | WP_003253652.1 | nucleoside diphosphate kinase regulator | - |
| REH59_RS27790 (REH59_27790) | - | 6089272..6089496 (-) | 225 | WP_003253651.1 | DUF1289 domain-containing protein | - |
| REH59_RS27795 (REH59_27795) | cyaY | 6089498..6089830 (-) | 333 | WP_004575827.1 | iron donor protein CyaY | - |
| REH59_RS27800 (REH59_27800) | lptM | 6090070..6090282 (+) | 213 | WP_014861347.1 | LPS translocon maturation chaperone LptM | - |
| REH59_RS27805 (REH59_27805) | lysA | 6090292..6091539 (+) | 1248 | WP_010955746.1 | diaminopimelate decarboxylase | - |
| REH59_RS27810 (REH59_27810) | dapF | 6091544..6092374 (+) | 831 | WP_014754812.1 | diaminopimelate epimerase | - |
| REH59_RS27815 (REH59_27815) | - | 6092388..6093098 (+) | 711 | WP_003253646.1 | DUF484 family protein | - |
| REH59_RS27820 (REH59_27820) | xerC | 6093098..6093997 (+) | 900 | WP_003253645.1 | tyrosine recombinase XerC | - |
| REH59_RS27825 (REH59_27825) | - | 6093994..6094689 (+) | 696 | WP_003253644.1 | HAD family hydrolase | - |
| REH59_RS27830 (REH59_27830) | sutA | 6094870..6095199 (-) | 330 | WP_003253643.1 | transcriptional regulator SutA | - |
| REH59_RS27835 (REH59_27835) | - | 6095629..6096960 (-) | 1332 | WP_003253642.1 | ammonium transporter | - |
| REH59_RS27840 (REH59_27840) | glnK | 6097007..6097345 (-) | 339 | WP_002555808.1 | P-II family nitrogen regulator | - |
| REH59_RS27845 (REH59_27845) | - | 6097865..6098131 (+) | 267 | WP_003253640.1 | accessory factor UbiK family protein | - |
| REH59_RS27850 (REH59_27850) | - | 6098132..6098485 (+) | 354 | WP_004575824.1 | gamma-glutamylcyclotransferase family protein | - |
| REH59_RS27855 (REH59_27855) | - | 6098439..6100508 (-) | 2070 | WP_121784204.1 | DUF4034 domain-containing protein | - |
| REH59_RS27860 (REH59_27860) | comM | 6100771..6102261 (+) | 1491 | WP_108079038.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| REH59_RS27865 (REH59_27865) | - | 6102295..6102723 (-) | 429 | WP_014861342.1 | DoxX family protein | - |
| REH59_RS27870 (REH59_27870) | - | 6102929..6103297 (-) | 369 | WP_173881306.1 | response regulator transcription factor | - |
| REH59_RS27875 (REH59_27875) | - | 6103294..6104286 (-) | 993 | WP_004575820.1 | response regulator | - |
| REH59_RS27880 (REH59_27880) | - | 6104526..6109574 (+) | 5049 | WP_320450373.1 | trifunctional serine/threonine-protein kinase/ATP-binding protein/sensor histidine kinase | - |
| REH59_RS27885 (REH59_27885) | ycaC | 6109671..6110297 (-) | 627 | WP_003253573.1 | isochorismate family cysteine hydrolase YcaC | - |
| REH59_RS27890 (REH59_27890) | - | 6110371..6110733 (-) | 363 | WP_012054076.1 | helix-turn-helix domain-containing protein | - |
| REH59_RS27895 (REH59_27895) | - | 6110914..6111900 (+) | 987 | WP_014861340.1 | GlxA family transcriptional regulator | - |
| REH59_RS27900 (REH59_27900) | - | 6112129..6113916 (+) | 1788 | WP_265536568.1 | monovalent cation:proton antiporter-2 (CPA2) family protein | - |
| REH59_RS27905 (REH59_27905) | - | 6114604..6114897 (+) | 294 | WP_012054079.1 | hypothetical protein | - |
| REH59_RS27910 (REH59_27910) | ycaC | 6115247..6115876 (-) | 630 | WP_010955763.1 | isochorismate family cysteine hydrolase YcaC | - |
| REH59_RS27915 (REH59_27915) | - | 6116105..6117016 (+) | 912 | WP_010955764.1 | LysR substrate-binding domain-containing protein | - |
| REH59_RS27920 (REH59_27920) | - | 6117224..6118486 (+) | 1263 | WP_320450374.1 | OprD family porin | - |
| REH59_RS27925 (REH59_27925) | - | 6118488..6120086 (+) | 1599 | WP_014860495.1 | MFS transporter | - |
| REH59_RS27930 (REH59_27930) | - | 6120215..6122197 (-) | 1983 | WP_098089554.1 | amidohydrolase | - |
| REH59_RS27935 (REH59_27935) | - | 6122397..6123215 (-) | 819 | WP_003253555.1 | alpha/beta fold hydrolase | - |
| REH59_RS27940 (REH59_27940) | - | 6123256..6123564 (-) | 309 | WP_003253554.1 | hypothetical protein | - |
| REH59_RS27945 (REH59_27945) | ycaC | 6123682..6124311 (-) | 630 | WP_003253552.1 | isochorismate family cysteine hydrolase YcaC | - |
| REH59_RS27950 (REH59_27950) | - | 6124633..6126060 (+) | 1428 | WP_003253551.1 | mechanosensitive ion channel domain-containing protein | - |
| REH59_RS27955 (REH59_27955) | - | 6126169..6127455 (-) | 1287 | WP_014860498.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| REH59_RS27960 (REH59_27960) | - | 6127613..6129103 (-) | 1491 | WP_014860499.1 | aldehyde dehydrogenase family protein | - |
| REH59_RS27965 (REH59_27965) | - | 6129239..6130129 (+) | 891 | WP_003253545.1 | LysR family transcriptional regulator | - |
| REH59_RS27970 (REH59_27970) | - | 6130333..6131727 (+) | 1395 | WP_004575228.1 | 2-oxoadipate dioxygenase/decarboxylase HglS | - |
| REH59_RS27975 (REH59_27975) | - | 6131780..6132706 (-) | 927 | WP_014860501.1 | LysR substrate-binding domain-containing protein | - |
| REH59_RS27980 (REH59_27980) | - | 6132864..6134252 (+) | 1389 | WP_121784208.1 | NorM family multidrug efflux MATE transporter | - |
| REH59_RS27985 (REH59_27985) | - | 6134334..6136001 (-) | 1668 | WP_014860504.1 | putative bifunctional diguanylate cyclase/phosphodiesterase | - |
| REH59_RS27990 (REH59_27990) | rep | 6136299..6138308 (+) | 2010 | WP_003253537.1 | DNA helicase Rep | - |
| REH59_RS27995 (REH59_27995) | - | 6138373..6138945 (+) | 573 | WP_003253535.1 | xanthine phosphoribosyltransferase | - |
| REH59_RS28000 (REH59_28000) | - | 6139056..6140915 (-) | 1860 | WP_014860505.1 | acetyl-CoA hydrolase/transferase C-terminal domain-containing protein | - |
| REH59_RS28005 (REH59_28005) | - | 6140994..6141845 (-) | 852 | WP_014860506.1 | RHS repeat-associated core domain-containing protein | - |
| REH59_RS28010 (REH59_28010) | - | 6142154..6142558 (-) | 405 | WP_033723760.1 | c-type cytochrome | - |
| REH59_RS28015 (REH59_28015) | - | 6142713..6143261 (-) | 549 | WP_003253526.1 | cupin domain-containing protein | - |
| REH59_RS28020 (REH59_28020) | alr | 6143369..6144442 (-) | 1074 | WP_014860507.1 | alanine racemase | - |
| REH59_RS28025 (REH59_28025) | dadA | 6144587..6145891 (-) | 1305 | WP_012054090.1 | D-amino acid dehydrogenase | - |
Sequence
Protein
Download Length: 496 a.a. Molecular weight: 53017.97 Da Isoelectric Point: 7.7100
>NTDB_id=906760 REH59_RS27860 WP_108079038.1 6100771..6102261(+) (comM) [Pseudomonas sp. BO3-4]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLKYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIATLVDMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAVRVAEARELQHRRQGCANAFLDLEGLRHHCGLVAADQVWLEGACERLTLSLRAAHRLLKVARTLADLEGCETI
GRTHLAEALQYRPGSS
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLKYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIATLVDMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAVRVAEARELQHRRQGCANAFLDLEGLRHHCGLVAADQVWLEGACERLTLSLRAAHRLLKVARTLADLEGCETI
GRTHLAEALQYRPGSS
Nucleotide
Download Length: 1491 bp
>NTDB_id=906760 REH59_RS27860 WP_108079038.1 6100771..6102261(+) (comM) [Pseudomonas sp. BO3-4]
ATGTCTCTAGCTCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAAGTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGCCGA
TATGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCGACGGCCAGGTGCCGATTGCCACCCTGGTCGATATGGAATGCCT
GGGCGAACTGGCGCTGTCGGGGAAATTGCGCCCGGTGCAGGGCGTGCTGCCTGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGTTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCGCTGCCGCCCTACGCAGCCAACGGCCTGATCCTGCAGCAACGCCC
CTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCAGCCAAGCGTGCCTTGCTGCTGGCTGCGGCCGGGGCGCACAACC
TGTTGTTCACCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAAGCGCTGGAAGTGGCGGCAATCCAGTCGGTCAGCGGGAAAGCGCCGCTGAACAGCTGGCCACAGCGCCCCTTTCG
CCACCCCCATCACTCTGCGTCCGGCCCGGCGCTGGTCGGTGGCGGTAGCCGACCGCAACCAGGTGAAATCACGCTCGCCC
ATCACGGCGTGTTGTTTCTCGACGAACTTCCGGAGTTTGAGCGGCGCGTACTGGAAGTGCTTCGCGAGCCACTGGAGTCA
GGTGAAATCGTGATTGCCCGTGCCCGCGACAAAGTGCGTTTCCCCGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGTTGCAGCACCGAGCAGATCGCGCGCTATCGCAACAAGCTGT
CCGGGCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAGAGCACTACATTGAACAACCAGCCTTGCGGT
GAAACCAGTGCCGATGTCGCCGTCAGGGTGGCTGAAGCGCGGGAGCTGCAGCACAGGCGACAAGGGTGTGCGAATGCATT
TCTCGACCTTGAAGGTTTAAGGCATCACTGTGGGTTGGTAGCGGCGGACCAAGTCTGGCTGGAAGGGGCCTGCGAGCGGC
TGACCTTGTCGCTACGCGCGGCGCACCGGTTGTTGAAGGTGGCGCGGACGTTGGCGGACCTGGAGGGATGCGAGACGATT
GGCCGGACGCACCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG
ATGTCTCTAGCTCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAAGTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGCCGA
TATGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCGACGGCCAGGTGCCGATTGCCACCCTGGTCGATATGGAATGCCT
GGGCGAACTGGCGCTGTCGGGGAAATTGCGCCCGGTGCAGGGCGTGCTGCCTGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGTTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCGCTGCCGCCCTACGCAGCCAACGGCCTGATCCTGCAGCAACGCCC
CTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCAGCCAAGCGTGCCTTGCTGCTGGCTGCGGCCGGGGCGCACAACC
TGTTGTTCACCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAAGCGCTGGAAGTGGCGGCAATCCAGTCGGTCAGCGGGAAAGCGCCGCTGAACAGCTGGCCACAGCGCCCCTTTCG
CCACCCCCATCACTCTGCGTCCGGCCCGGCGCTGGTCGGTGGCGGTAGCCGACCGCAACCAGGTGAAATCACGCTCGCCC
ATCACGGCGTGTTGTTTCTCGACGAACTTCCGGAGTTTGAGCGGCGCGTACTGGAAGTGCTTCGCGAGCCACTGGAGTCA
GGTGAAATCGTGATTGCCCGTGCCCGCGACAAAGTGCGTTTCCCCGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGTTGCAGCACCGAGCAGATCGCGCGCTATCGCAACAAGCTGT
CCGGGCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAGAGCACTACATTGAACAACCAGCCTTGCGGT
GAAACCAGTGCCGATGTCGCCGTCAGGGTGGCTGAAGCGCGGGAGCTGCAGCACAGGCGACAAGGGTGTGCGAATGCATT
TCTCGACCTTGAAGGTTTAAGGCATCACTGTGGGTTGGTAGCGGCGGACCAAGTCTGGCTGGAAGGGGCCTGCGAGCGGC
TGACCTTGTCGCTACGCGCGGCGCACCGGTTGTTGAAGGTGGCGCGGACGTTGGCGGACCTGGAGGGATGCGAGACGATT
GGCCGGACGCACCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio campbellii strain DS40M4 |
56.048 |
100 |
0.56 |
| comM | Haemophilus influenzae Rd KW20 |
55.4 |
100 |
0.558 |
| comM | Vibrio cholerae strain A1552 |
55.556 |
99.798 |
0.554 |
| comM | Glaesserella parasuis strain SC1401 |
54.291 |
100 |
0.548 |
| comM | Legionella pneumophila str. Paris |
49.194 |
100 |
0.492 |
| comM | Legionella pneumophila strain ERS1305867 |
49.194 |
100 |
0.492 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
47.61 |
100 |
0.482 |