Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SJY15_RS01965 Genome accession   NZ_CP139003
Coordinates   419498..421003 (-) Length   501 a.a.
NCBI ID   WP_396588144.1    Uniprot ID   -
Organism   Bermanella sp. R86531     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 414498..426003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJY15_RS01945 - 415621..416790 (+) 1170 WP_396588140.1 hypothetical protein -
  SJY15_RS01950 - 416919..417728 (+) 810 WP_396588141.1 hypothetical protein -
  SJY15_RS01955 - 417741..418805 (+) 1065 WP_396588142.1 KTSC domain-containing protein -
  SJY15_RS01960 - 418858..419238 (+) 381 WP_396588143.1 hypothetical protein -
  SJY15_RS01965 comM 419498..421003 (-) 1506 WP_396588144.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SJY15_RS01970 - 421151..421834 (+) 684 WP_396588145.1 hypothetical protein -
  SJY15_RS01975 - 421843..422082 (-) 240 WP_396588146.1 accessory factor UbiK family protein -
  SJY15_RS01980 - 422307..422951 (+) 645 WP_396588147.1 TorF family putative porin -
  SJY15_RS01985 glnK 423020..423358 (+) 339 WP_396588148.1 P-II family nitrogen regulator -
  SJY15_RS01990 urtA 423635..424918 (+) 1284 WP_396588149.1 urea ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54328.68 Da        Isoelectric Point: 7.9950

>NTDB_id=906711 SJY15_RS01965 WP_396588144.1 419498..421003(-) (comM) [Bermanella sp. R86531]
MSLAVIIARAKVGVDAPIVQVETHLSNGLPSFSIVGLPETAVKESKDRVRSAILNSGFEFPAMRITVNLAPADLPKEGGR
FDLAIALGILTASDQLPENCLDEYECIGELALTGAIRPVQGVIPAALAAQQANRKLIIPLANAEEASLCPGTMYSSEHLL
EVARMLQGEGKLARVKHQPLKDEPYHGPDLKQVKGQQQAKHALEIAAAGGHNLLMNGPPGTGKSMLAHCLPGILPPLSLQ
EALEVAALYSVSRQPKRAYFSTRPFRQPHHTCSGVALVGGGAHPKPGEISLAHKGVLFLDEVPEFSRKVLDVMREPLETG
HVSISRAAAQVHYPAEFQLVAAMNPCPCGYLNVPNKRCGDCSEAKAFRYQSAVSGPLLDRIDLQLEVPALPKGLLSTDST
QIESSAEVRKRVIAARLIQHQRQNCVNAKLSQRDIEQYCPLSQELRSLLENALEKLGLSARAYHRVIKVARTIADLQASE
QIEKSHLLEALGYRQLERRFG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=906711 SJY15_RS01965 WP_396588144.1 419498..421003(-) (comM) [Bermanella sp. R86531]
ATGTCATTAGCCGTGATTATCGCGCGCGCAAAGGTAGGGGTCGATGCTCCTATTGTGCAAGTCGAAACCCATCTGAGTAA
TGGGTTACCTAGCTTTTCTATAGTGGGTCTGCCCGAAACCGCGGTAAAAGAAAGTAAAGACAGGGTGCGCAGTGCCATCT
TAAACAGTGGCTTTGAATTTCCCGCCATGCGCATCACCGTCAACCTTGCCCCCGCCGATTTACCCAAAGAAGGCGGGCGC
TTCGATTTAGCCATTGCATTGGGCATTTTAACCGCCAGCGATCAACTGCCCGAAAACTGTTTAGACGAATACGAATGCAT
TGGTGAACTCGCCCTCACCGGCGCTATCCGACCCGTGCAGGGCGTTATTCCCGCTGCACTGGCCGCGCAACAGGCCAACC
GTAAGTTGATCATTCCCCTAGCTAACGCCGAGGAAGCCAGTTTGTGCCCTGGCACTATGTATAGCAGTGAACACTTGTTA
GAAGTTGCGCGCATGTTGCAAGGGGAGGGCAAACTCGCCCGAGTAAAACACCAGCCACTTAAAGACGAACCTTACCATGG
CCCCGATTTAAAACAGGTCAAAGGTCAACAGCAAGCCAAACATGCGTTAGAGATAGCCGCTGCCGGTGGCCACAATTTAT
TAATGAACGGCCCACCAGGCACCGGCAAAAGTATGCTTGCCCATTGCTTGCCGGGTATTTTACCGCCCTTAAGCTTACAA
GAAGCCTTAGAAGTAGCCGCGCTTTATAGTGTAAGCCGCCAGCCAAAACGCGCGTATTTTTCCACGCGCCCCTTCAGGCA
ACCTCACCATACCTGCTCAGGCGTAGCACTTGTGGGCGGTGGTGCTCACCCCAAACCCGGCGAAATATCCTTAGCCCATA
AAGGTGTACTATTTTTAGATGAAGTACCAGAGTTTTCGCGCAAGGTACTAGATGTTATGCGAGAACCGTTAGAAACCGGT
CATGTCAGTATTAGCCGCGCCGCGGCACAAGTGCATTACCCCGCTGAATTTCAATTGGTAGCAGCCATGAACCCGTGCCC
GTGTGGTTATTTAAACGTCCCAAATAAACGCTGTGGCGATTGTAGCGAAGCAAAAGCGTTTCGCTACCAAAGCGCTGTAT
CTGGGCCCTTGCTCGACCGAATTGATTTACAACTGGAAGTACCTGCTTTACCCAAAGGACTTTTATCCACAGACAGTACG
CAAATTGAATCCAGCGCAGAAGTACGCAAACGTGTCATTGCCGCACGGTTAATTCAACACCAACGCCAAAACTGTGTGAA
TGCCAAGCTCTCTCAGCGGGATATTGAACAATATTGCCCACTAAGCCAAGAATTGCGCAGCCTATTGGAAAATGCATTGG
AGAAACTGGGCTTAAGCGCCCGCGCTTACCATCGTGTAATAAAAGTGGCGCGAACCATTGCCGATTTGCAGGCCAGCGAA
CAGATTGAAAAATCGCACCTTTTAGAGGCATTGGGCTACCGACAGTTGGAAAGGCGTTTTGGATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.4

99.8

0.573
  comM Vibrio campbellii strain DS40M4

56.6

99.8

0.565
  comM Haemophilus influenzae Rd KW20

54.563

100

0.549
  comM Glaesserella parasuis strain SC1401

52.778

100

0.531
  comM Legionella pneumophila str. Paris

51.406

99.401

0.511
  comM Legionella pneumophila strain ERS1305867

51.406

99.401

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.461