Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SIC19_RS07050 Genome accession   NZ_CP138916
Coordinates   1511982..1513505 (-) Length   507 a.a.
NCBI ID   WP_075195023.1    Uniprot ID   A0A1Q8GAF2
Organism   Marinobacter sp. MIT930201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1506982..1518505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC19_RS07020 metW 1507805..1508407 (+) 603 WP_075195028.1 methionine biosynthesis protein MetW -
  SIC19_RS07025 - 1508404..1508862 (+) 459 WP_075195027.1 DUF4426 domain-containing protein -
  SIC19_RS07030 rdgB 1508862..1509473 (+) 612 WP_075195026.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  SIC19_RS07035 hemW 1509476..1510630 (+) 1155 WP_091642238.1 radical SAM family heme chaperone HemW -
  SIC19_RS07040 - 1510630..1511163 (+) 534 WP_041332628.1 hypothetical protein -
  SIC19_RS07045 trmB 1511189..1511905 (-) 717 WP_075195024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SIC19_RS07050 comM 1511982..1513505 (-) 1524 WP_075195023.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SIC19_RS07055 - 1513565..1513819 (-) 255 WP_075195022.1 accessory factor UbiK family protein -
  SIC19_RS07060 glnK 1514237..1514575 (+) 339 WP_004578958.1 P-II family nitrogen regulator -
  SIC19_RS07065 - 1514648..1515928 (+) 1281 WP_075195021.1 ammonium transporter -
  SIC19_RS07070 - 1516078..1516221 (-) 144 WP_221886060.1 DUF6316 family protein -
  SIC19_RS07075 - 1516388..1516984 (-) 597 WP_075195020.1 DUF2931 family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 53789.75 Da        Isoelectric Point: 7.1820

>NTDB_id=905857 SIC19_RS07050 WP_075195023.1 1511982..1513505(-) (comM) [Marinobacter sp. MIT930201]
MFAVVHTRASIGVSAPSVTVEVHLSGGLPALSIVGLPETGVRESRERVRSALMNAGFEFPARRITINLAPADLPKEGGRF
DLPIALGILAASGQIPAESLAQYECVGELSLDGALRPLKGVLPAILAARNEGRRLLIPQANAAEAALASQDDVLPAGHLL
TVCEHLCDRARISPVPPAVPETGVNAGPDLADVHGQSVPRRALEIAAAGGHNLLMFGPPGTGKSMLASRLPGILPPLTTE
SALEVASIHSVAGLPVRDGEWCRPPYRAPHHTASSVAMVGGGSSPRPGEISLAHRGVLFLDELPEFERRVLEVLREPMES
GEIAISRAARQVTFPACFQVVAAMNPCPCGYLGHPTIECQCTPPQVLRYRAKISGPLLDRFDLHVEVPVQSGEVLMKRDG
GGESSTVVRDRVYQARERQMQRGSGNAALSGGELQTHCRVDAAGEAMLSAAMERLGLSARALHRILRVARTLADLDGLDH
IGNGHLVEALGYRKLDRQQTRNAQVSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=905857 SIC19_RS07050 WP_075195023.1 1511982..1513505(-) (comM) [Marinobacter sp. MIT930201]
ATGTTTGCCGTTGTCCATACCCGCGCCAGCATTGGCGTTTCAGCACCCTCCGTTACCGTTGAAGTCCACCTGTCAGGCGG
CCTGCCGGCGCTGTCCATCGTCGGGCTCCCCGAAACGGGTGTTCGCGAAAGCCGGGAGCGTGTTCGCAGTGCGCTGATGA
ACGCCGGCTTTGAATTCCCCGCCCGCCGAATCACCATCAATCTGGCTCCTGCGGACCTGCCCAAGGAGGGCGGCCGCTTC
GATCTCCCCATTGCCCTGGGCATTCTTGCCGCTTCCGGACAGATTCCGGCGGAAAGCCTCGCACAGTATGAATGCGTGGG
AGAGCTTTCCCTGGATGGTGCGCTGAGACCGTTGAAAGGTGTGCTCCCGGCGATACTGGCAGCTCGCAACGAGGGGCGTC
GGTTGCTGATCCCCCAGGCCAATGCCGCGGAAGCCGCACTGGCCAGCCAGGACGATGTGTTGCCAGCCGGCCATTTACTG
ACGGTCTGCGAACACCTGTGTGATCGGGCAAGGATTTCCCCGGTACCGCCAGCGGTGCCGGAAACGGGCGTGAACGCCGG
TCCGGACCTTGCGGACGTGCATGGTCAGAGCGTGCCGCGGCGGGCGTTGGAAATCGCCGCCGCCGGCGGGCATAACCTGC
TGATGTTTGGTCCACCGGGCACTGGTAAAAGCATGCTCGCCAGCCGTCTGCCGGGTATTTTGCCACCGTTAACCACCGAA
TCTGCGCTTGAGGTAGCAAGCATCCACTCTGTGGCCGGTCTTCCCGTACGGGACGGAGAGTGGTGCCGGCCGCCTTACCG
CGCGCCCCATCATACTGCCTCGTCGGTTGCCATGGTGGGTGGCGGTAGCAGTCCGCGCCCCGGAGAAATCTCCCTGGCGC
ACCGCGGCGTGTTGTTTCTCGACGAACTGCCAGAGTTCGAGCGCCGGGTGCTGGAAGTGCTGCGGGAACCCATGGAGTCC
GGCGAGATTGCCATCAGTCGCGCAGCAAGGCAGGTGACTTTTCCGGCCTGCTTCCAGGTCGTGGCGGCCATGAACCCGTG
CCCGTGTGGCTATCTGGGGCATCCGACGATTGAGTGCCAGTGTACGCCCCCGCAGGTGCTCCGTTATCGGGCAAAGATAT
CAGGGCCACTGCTGGACCGGTTCGATTTGCATGTGGAAGTGCCGGTTCAGAGCGGGGAAGTGCTGATGAAGCGTGACGGT
GGGGGTGAGTCCAGCACGGTTGTGCGGGATCGGGTGTATCAGGCCCGCGAGCGGCAAATGCAGCGAGGATCCGGAAACGC
CGCGTTAAGTGGCGGTGAGCTGCAGACGCACTGCCGCGTGGATGCAGCAGGCGAGGCCATGTTATCCGCCGCCATGGAGC
GGCTGGGGCTCTCTGCCAGGGCATTGCATCGCATCCTGCGGGTGGCACGGACCCTGGCGGACCTGGACGGCCTCGACCAC
ATTGGCAATGGCCATCTGGTTGAGGCGTTGGGTTACCGCAAGCTGGACCGGCAGCAGACCCGGAATGCGCAGGTTTCGGT
ATAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(20-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.728

98.028

0.536
  comM Glaesserella parasuis strain SC1401

53.187

99.014

0.527
  comM Haemophilus influenzae Rd KW20

53.293

98.817

0.527
  comM Vibrio campbellii strain DS40M4

53.521

98.028

0.525
  comM Legionella pneumophila str. Paris

50.101

97.633

0.489
  comM Legionella pneumophila strain ERS1305867

50.101

97.633

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.255

100

0.475