Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SHK10_RS24980 Genome accession   NZ_CP138833
Coordinates   5115937..5117457 (+) Length   506 a.a.
NCBI ID   WP_017899414.1    Uniprot ID   A0AAE4MU22
Organism   Klebsiella quasipneumoniae subsp. similipneumoniae strain ACESH00366hy     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5110937..5122457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHK10_RS24960 ilvE 5112497..5113426 (-) 930 WP_002883171.1 branched-chain-amino-acid transaminase -
  SHK10_RS24965 ilvM 5113443..5113700 (-) 258 WP_004886870.1 acetolactate synthase 2 small subunit -
  SHK10_RS24970 ilvG 5113697..5115343 (-) 1647 WP_252116881.1 acetolactate synthase 2 catalytic subunit -
  SHK10_RS27320 ilvX 5115346..5115399 (-) 54 WP_201281575.1 peptide IlvX -
  SHK10_RS24975 ilvL 5115484..5115582 (-) 99 WP_001311244.1 ilv operon leader peptide -
  SHK10_RS24980 comM 5115937..5117457 (+) 1521 WP_017899414.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SHK10_RS24985 - 5117482..5117820 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  SHK10_RS24990 hdfR 5117939..5118760 (+) 822 WP_004886879.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55136.45 Da        Isoelectric Point: 8.4873

>NTDB_id=905099 SHK10_RS24980 WP_017899414.1 5115937..5117457(+) (comM) [Klebsiella quasipneumoniae subsp. similipneumoniae strain ACESH00366hy]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPSVDERGEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESTAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRTSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=905099 SHK10_RS24980 WP_017899414.1 5115937..5117457(+) (comM) [Klebsiella quasipneumoniae subsp. similipneumoniae strain ACESH00366hy]
ATGTCGCTCGCCATCGTCTATACCCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTGTCGAGGTTCATCTCAGCAA
CGGTCTGCCCGGCCTGACTATGGTCGGACTGCCGGAGACCACCGTGAAAGAGGCCCGTGACCGGGTTCGCAGCGCCCTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCGCCAGCGGATCTGCCTAAAGAGGGCGGGCGA
TACGATCTACCTATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTCACAGGTGGGTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAAGCCATCAAAGCCGGCC
GGCGTATAGTCGTCTCCTCTGATAATGCGGCTGAGGTCGGCCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAGGAGGTGTGTGCTTTTCTCGCGGGGCAGACATCGCTTTCGCCGCCTCTCGCCGAGGCACCCTCTGTTGATGAACGCGG
CGAAGATCTGCGCGATGTTATCGGCCAGCAGCAGGGCAAGCGAGCGCTGGAGATTGTGGCCGCCGGGGGTCACAACCTGC
TCCTGATCGGCCCGCCCGGCACCGGGAAAACCATGCTTGCCAGCCGGCTACCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCACTGGAGAGCACGGCCATTCAGAGTCTGGTCAATCTGCATACCGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCACCTCATCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGCTCGATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAGCTGCCGGAGTTTGAGCGGCGTGTACTGGATGCGCTGCGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCGGCGATGAACCCAAG
CCCGACAGGGCATTATCAGGGCAAACATAATCGTACATCGCCTGAGCAGACATTACGTTATCTGGGACGTCTGTCAGGCC
CCTTCCTTGACCGCTTCGATCTCTCCTTAGAGATCCCGCTGCCGCCGCCAGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAGTCTAGCGCAACGGTCCGACAACGGGTGCTGGCGGCGCGCGAACGGCAAATGCTCAGACAAAATAAGCTCAATGCGCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGCCACTTACGGCGGGAGGACGCTGTCTGGCTGGAACAGACGCTAACGCAGC
TGGGGCTCTCTATACGAGCCTGGCAGCGTCTGTTAAAGGTGGCGAGAACCATTGCCGATCTGGCAGAGGCTGAAGAGATT
GAACGCCGTCATTTGCAGGAGGCGCTCAGCTATCGGGCGATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.47

100

0.611
  comM Glaesserella parasuis strain SC1401

59.921

100

0.603
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.814

100

0.453