Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Cthiooxydans_RS01045 Genome accession   NZ_AP025193
Coordinates   240969..242507 (+) Length   512 a.a.
NCBI ID   WP_059440125.1    Uniprot ID   -
Organism   Comamonas thiooxydans strain NR4028     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 235969..247507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cthiooxydans_RS01025 (Cthiooxydans_02020) - 236697..238025 (-) 1329 WP_087864402.1 sulfatase -
  Cthiooxydans_RS01030 (Cthiooxydans_02030) - 238139..239131 (-) 993 WP_087864403.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  Cthiooxydans_RS01035 (Cthiooxydans_02040) - 239272..240243 (-) 972 WP_012836691.1 tripartite tricarboxylate transporter substrate binding protein -
  Cthiooxydans_RS01040 (Cthiooxydans_02050) - 240336..240884 (+) 549 WP_087864401.1 MarR family winged helix-turn-helix transcriptional regulator -
  Cthiooxydans_RS01045 (Cthiooxydans_02060) comM 240969..242507 (+) 1539 WP_059440125.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Cthiooxydans_RS01050 (Cthiooxydans_02070) - 242521..243450 (-) 930 WP_229227837.1 LysR substrate-binding domain-containing protein -
  Cthiooxydans_RS01055 (Cthiooxydans_02080) - 243562..244740 (+) 1179 WP_087865201.1 YbfB/YjiJ family MFS transporter -
  Cthiooxydans_RS01060 (Cthiooxydans_02090) - 244775..245842 (+) 1068 WP_229227839.1 NAD(P)H-dependent flavin oxidoreductase -
  Cthiooxydans_RS01065 (Cthiooxydans_02100) - 245893..247173 (-) 1281 WP_087865554.1 CaiB/BaiF CoA transferase family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54746.71 Da        Isoelectric Point: 7.3506

>NTDB_id=90398 Cthiooxydans_RS01045 WP_059440125.1 240969..242507(+) (comM) [Comamonas thiooxydans strain NR4028]
MGLALVQSRALLGLQAPAVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNAGLEFPNNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAQRLADYEFAGELSLTGALRPVRGALATALALQRQQQRVRLVLPPDSALEAAFVPAIEVFGA
AHLLDVVRQFIAHDATLSEQGDGVEGWQRVHSRPAEASLPSLDLREVRGQMQAKRALEIAAAGAHGVLMIGPPGSGKSML
AQRFAGLLPGMTDEEALEAAAIASLSGRFTPQLWRQRPFAAPHHTASSIALVGGGSPPRPGEISYAHCGALFLDELPEFA
RSALEALREPLETGRITIVRAVQRAEFPARFQLVAAMNPCPCGFWGSRIRACRCSPDQVARYQARISGPLLDRIDLHVEV
AALSPEELLAAPEGESSAAVQQRVSAARDKALQRQGLPNHQLQGAQLDTHLQLEPEALTFAHKAAARLGWSARGTHRALK
VARTIADLADSDAITQTHLAEALQYRRALMQP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=90398 Cthiooxydans_RS01045 WP_059440125.1 240969..242507(+) (comM) [Comamonas thiooxydans strain NR4028]
ATGGGTCTGGCACTGGTTCAAAGTCGTGCACTGCTGGGCTTGCAGGCACCGGCTGTCACGGTGGAGGTCCATCTGGCCAA
CGGACTGCCTTCGTTCACCCTGGTGGGTCTGGCGGATGTGGAGGTCAAGGAGGCCCGCGAGCGCGTGCGCGCAGCCATCG
TCAATGCAGGGCTGGAGTTCCCGAACAATAAGCGCATCACGGTCAATCTGGCTCCGGCGGATCTGCCCAAGGACTCAGGC
CGCTTTGACCTGCCGATAGCGCTGGGCATTCTGGCGGCCAGCGGGCAGATCGATGCACAGCGGCTCGCCGATTATGAGTT
TGCAGGAGAGCTGTCGCTGACCGGTGCCCTGCGCCCGGTACGCGGCGCCCTGGCTACTGCACTGGCCCTGCAGCGGCAGC
AACAGCGTGTGCGGCTGGTGCTGCCGCCGGACAGTGCGCTGGAGGCCGCCTTTGTGCCGGCCATCGAAGTCTTCGGCGCC
GCGCATCTGCTGGATGTGGTCAGGCAGTTCATCGCGCATGACGCCACCCTGTCGGAGCAGGGCGATGGCGTGGAGGGCTG
GCAGCGGGTGCACTCCAGACCTGCTGAAGCCTCTTTGCCGTCGCTGGATCTGCGCGAGGTGCGCGGCCAGATGCAGGCCA
AGCGCGCGCTTGAAATTGCAGCTGCCGGCGCGCATGGTGTGCTGATGATCGGCCCTCCGGGCTCGGGGAAATCCATGCTG
GCCCAGCGCTTTGCGGGTTTGCTGCCGGGCATGACCGATGAGGAAGCGCTCGAAGCCGCCGCCATTGCCAGCCTCAGCGG
TCGTTTCACGCCGCAGCTGTGGCGCCAGCGGCCATTTGCCGCTCCTCATCACACGGCCAGTTCCATCGCCTTGGTCGGCG
GCGGCTCTCCGCCCCGGCCCGGCGAGATTTCATATGCCCATTGCGGGGCGCTGTTTCTCGACGAGCTGCCCGAGTTCGCG
CGCAGCGCCCTGGAGGCCCTGCGCGAGCCGCTGGAGACTGGGCGCATCACCATCGTGCGGGCCGTGCAGAGGGCGGAGTT
TCCGGCCCGTTTCCAGCTGGTGGCAGCCATGAACCCCTGTCCCTGCGGCTTCTGGGGGTCGCGCATCAGGGCCTGCCGCT
GCTCGCCCGATCAGGTGGCCCGCTATCAGGCACGCATCAGCGGTCCCTTGCTGGACCGTATCGATCTGCATGTGGAGGTG
GCGGCACTGTCGCCCGAGGAGTTGCTGGCAGCGCCCGAAGGGGAGAGCAGCGCTGCCGTGCAGCAACGCGTGAGCGCGGC
CAGGGACAAGGCCTTGCAGCGCCAGGGCCTGCCCAATCATCAGTTGCAAGGGGCACAGCTCGACACGCATCTGCAGCTGG
AGCCCGAGGCGCTGACCTTTGCCCACAAGGCTGCAGCGCGCCTTGGCTGGTCGGCGCGCGGCACGCACCGGGCCTTGAAG
GTGGCGCGAACCATTGCCGATCTGGCGGACTCGGATGCCATCACGCAAACCCATCTGGCCGAGGCATTGCAGTACCGCCG
CGCGCTGATGCAGCCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.137

99.609

0.529
  comM Vibrio campbellii strain DS40M4

51.373

99.609

0.512
  comM Haemophilus influenzae Rd KW20

51.181

99.219

0.508
  comM Glaesserella parasuis strain SC1401

49.216

99.609

0.49
  comM Legionella pneumophila str. Paris

47.5

100

0.482
  comM Legionella pneumophila strain ERS1305867

47.5

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.922

99.609

0.438

Multiple sequence alignment