Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SD415_RS24060 Genome accession   NZ_CP138570
Coordinates   4977975..4979495 (+) Length   506 a.a.
NCBI ID   WP_046274875.1    Uniprot ID   -
Organism   Citrobacter braakii strain JX21CE32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4972975..4984495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD415_RS24040 (SD415_24035) - 4974530..4975459 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  SD415_RS24045 (SD415_24040) ilvM 4975477..4975740 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  SD415_RS24050 (SD415_24045) ilvG 4975737..4977383 (-) 1647 WP_075849014.1 acetolactate synthase 2 catalytic subunit -
  SD415_RS24055 (SD415_24050) ilvL 4977523..4977621 (-) 99 WP_001311244.1 ilv operon leader peptide -
  SD415_RS24060 (SD415_24055) comM 4977975..4979495 (+) 1521 WP_046274875.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SD415_RS24065 (SD415_24060) maoP 4979521..4979859 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  SD415_RS24070 (SD415_24065) hdfR 4979966..4980811 (+) 846 WP_087121878.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55174.18 Da        Isoelectric Point: 7.3092

>NTDB_id=903569 SD415_RS24060 WP_046274875.1 4977975..4979495(+) (comM) [Citrobacter braakii strain JX21CE32]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTPHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QTVCAFLEGKHDLDRPSSADFTPNALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLIHSDTIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSAMKG
ENSATVKQRVMAARERQYQRQNKLNAHLDSQDIHKYCLLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQCDHI
SRQHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=903569 SD415_RS24060 WP_046274875.1 4977975..4979495(+) (comM) [Citrobacter braakii strain JX21CE32]
ATGTCACTATCGATTGTTCACACACGCGCCGCGCTAGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
CGGCCTGCCTGGTTTAACCATGGTGGGGCTGCCCGAAACGACGGTGAAAGAGGCTCGCGATCGGGTACGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCAGCAAAGAAAATAACTATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGGCGA
TATGATTTACCTATCGCTGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACACCCCACAATCTCGACACCTACGAGCTGGT
AGGTGAATTAGCGCTTACAGGCGCGCTACGCGGCGTTCCCGGCGCGATATCAAGCGCAACCGAGGCCATTCGTGCAGGCA
GGCGAATTATTGTCGCAAAAGAGAATGCCGCTGAAGTTGGACTGATACACGGCGAAGGGTGCCTGATCGCCGATCACCTG
CAGACCGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGGCCATCATCCGCAGATTTTACGCCTAACGCATTAGC
TGATGATCTGAGTGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCAGGCGGCCACAATCTCT
TGCTCATCGGCCCGCCGGGTACGGGAAAGACTATGCTAGCCAGTCGACTCAGAGGGCTACTCCCTCCACTTAGCAACGAT
GAAGCGCTGGAAAGTGCCGCGATACTCAGTCTGATCCATTCCGACACGATACAAAAACAGTGGAAGCAGCGCCCTTTTCG
CTCGCCACATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGAGAGATCTCTTTGGCGC
ACAACGGCATACTGTTTCTGGATGAACTACCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGCGAACCCATCGAGTCC
GGGCAGATCCATCTATCCCGCACCAGAGCAAAAATAACCTATCCCGCACGCTTTCAACTCATAGCTGCGATGAATCCGAG
CCCGACGGGCCATTATCAGGGGAACCATAACCGCTGTACCCCAGAACAGACGCTGCGCTACCTAAATCGATTGTCAGGTC
CATTTCTTGACCGCTTCGACCTCTCCCTCGAAATTCCCTTACCGCCGCCCGGTATACTCAGCCAGAGCGCGATGAAAGGG
GAAAATAGCGCAACGGTGAAGCAACGTGTTATGGCAGCGCGAGAGCGTCAGTATCAGCGGCAAAATAAGTTAAACGCACA
TCTGGACAGTCAGGATATCCATAAATACTGCCTACTGCGTAGCGACGATGCACAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTGTCTATCCGCGCCTGGCTGCGCCTGATTAAGGTCGCTCGAACGATTGCGGATATCGAACAATGTGATCACATC
TCTCGCCAGCATTTACAGGAGGCCGTTGGGTACCGAGCGATAGACAGGTTACTCATTCATCTGCAGAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Haemophilus influenzae Rd KW20

57.534

100

0.581
  comM Glaesserella parasuis strain SC1401

57.367

100

0.577
  comM Vibrio campbellii strain DS40M4

57.738

99.605

0.575
  comM Legionella pneumophila str. Paris

47.284

98.221

0.464
  comM Legionella pneumophila strain ERS1305867

47.284

98.221

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

99.605

0.427