Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RZE77_RS01150 Genome accession   NZ_CP138513
Coordinates   250288..251838 (-) Length   516 a.a.
NCBI ID   WP_319440323.1    Uniprot ID   -
Organism   Variovorax paradoxus strain SPNA7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 245288..256838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZE77_RS01140 (RZE77_01140) tagF 247335..248060 (+) 726 WP_012745379.1 type VI secretion system-associated protein TagF -
  RZE77_RS01145 (RZE77_01145) - 248092..250257 (+) 2166 WP_319440322.1 serine/threonine-protein kinase -
  RZE77_RS01150 (RZE77_01150) comM 250288..251838 (-) 1551 WP_319440323.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RZE77_RS01155 (RZE77_01155) - 252056..252880 (+) 825 WP_319440324.1 TorF family putative porin -
  RZE77_RS01160 (RZE77_01160) glnK 252951..253289 (+) 339 WP_007833403.1 P-II family nitrogen regulator -
  RZE77_RS01165 (RZE77_01165) amt 253312..254832 (+) 1521 WP_319440325.1 ammonium transporter -
  RZE77_RS01170 (RZE77_01170) - 255095..256030 (+) 936 WP_319440326.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 53973.71 Da        Isoelectric Point: 8.2056

>NTDB_id=903259 RZE77_RS01150 WP_319440323.1 250288..251838(-) (comM) [Variovorax paradoxus strain SPNA7]
MSLSLVQSRALLGLEAASVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPNNKKIVVNLAPADLPKDSG
RFDLPIALGILAASGQIQPALLAGHEFAGELSLSGELRPVRGALAMALALHTRGIATRLVLPAASAQEAALVPGSEVYGA
RHLLDVVQRFMPEGAALPQGEEQQQQPAADGWARVHAAAAAPAPLYADLADVKGHAGAKRALEIAAAGGHSLLMVGEPGS
GKSMLAQRFAGLLPPMSVDEALESAAVASLAGSFSAARWMNRPTSAPHHTSSAVALVGGGSPPRPGEISQAHHGVLFLDE
FPEFARSALEALREPLETGTITIARAARRAEFPARFQLVAAMNPCPCGYLGSTLKACRCTPDQISRYQAKLSGPLLDRID
LHIEVPAVSAQQLIDAPPGESTASIRTRVVAAREFAVQRQGSPNQALQAGAIDKHAALDDAARKFVYNAAAKLGWSARST
HRALKVARTVADLAGAESVGVVHVAEAVQYRRALRN

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=903259 RZE77_RS01150 WP_319440323.1 250288..251838(-) (comM) [Variovorax paradoxus strain SPNA7]
ATGAGCCTGTCTTTGGTGCAAAGCCGTGCTTTGCTTGGGCTGGAAGCGGCCAGTGTCACGGTCGAGGTGCATCTGGCGAA
CGGCCTTCCGAGCTTCACGCTCGTCGGGCTGGCGGAAACAGAAGTCAAGGAGGCGCGCGAAAGAGTGCGCTCGGCCATCC
AGAACGCCGGCCTGGAGTTTCCGAACAACAAGAAGATCGTCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGACTCCGGC
CGCTTCGACCTGCCGATCGCGCTCGGCATCCTCGCGGCCAGCGGGCAGATCCAGCCCGCGCTCCTGGCGGGGCATGAATT
TGCCGGCGAACTCTCCCTTTCAGGCGAACTGCGGCCCGTGCGCGGCGCGCTGGCGATGGCGCTGGCCCTGCACACGCGCG
GCATCGCGACACGGCTGGTGCTGCCCGCCGCAAGCGCGCAGGAAGCGGCGCTGGTGCCCGGCAGCGAGGTGTACGGCGCC
AGGCACCTGCTGGACGTGGTGCAGCGCTTCATGCCCGAGGGCGCGGCGCTGCCGCAGGGCGAGGAACAGCAGCAGCAGCC
CGCCGCGGACGGCTGGGCCCGGGTGCATGCCGCAGCCGCGGCGCCCGCGCCGCTCTATGCCGACCTGGCCGACGTCAAGG
GCCATGCGGGCGCCAAACGCGCCCTCGAGATCGCCGCCGCGGGCGGGCACAGCCTGCTGATGGTGGGCGAGCCCGGCTCG
GGCAAGTCGATGCTGGCACAGCGCTTTGCCGGCCTGCTGCCGCCCATGAGCGTCGACGAGGCGCTGGAGAGCGCGGCCGT
GGCCAGCCTGGCCGGCAGTTTTTCGGCCGCGCGCTGGATGAACCGGCCGACCTCGGCGCCCCACCACACATCGAGCGCCG
TGGCCCTGGTGGGCGGCGGCTCGCCCCCGCGGCCCGGCGAGATCTCGCAGGCGCATCACGGCGTGCTCTTTTTGGACGAG
TTCCCGGAGTTCGCGCGCTCCGCCCTCGAGGCGCTGCGCGAGCCGCTGGAGACGGGCACCATCACCATCGCGCGCGCCGC
CCGGCGCGCCGAGTTTCCGGCGCGCTTCCAGCTGGTCGCGGCCATGAACCCCTGCCCTTGCGGCTACCTGGGCTCGACGC
TGAAGGCCTGCCGCTGCACGCCGGACCAGATCTCGCGCTACCAGGCCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGAC
CTGCACATCGAGGTGCCCGCGGTATCGGCGCAGCAGCTCATCGATGCGCCGCCCGGCGAATCGACGGCCAGCATCCGCAC
CCGCGTGGTGGCCGCGCGCGAGTTCGCCGTGCAGCGCCAGGGCAGCCCCAACCAGGCGCTGCAGGCCGGCGCCATCGACA
AGCATGCCGCGCTCGACGACGCGGCGCGCAAGTTCGTCTACAACGCCGCCGCCAAGCTCGGCTGGTCGGCGCGCAGCACG
CACCGCGCGCTCAAGGTGGCGCGCACCGTGGCCGACCTGGCGGGCGCCGAATCGGTGGGGGTGGTGCATGTGGCGGAGGC
GGTGCAGTACCGCAGGGCGCTGCGGAACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(208-412)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(419-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.195

99.612

0.5
  comM Legionella pneumophila strain ERS1305867

49.13

100

0.492
  comM Legionella pneumophila str. Paris

49.13

100

0.492
  comM Haemophilus influenzae Rd KW20

48.936

100

0.49
  comM Glaesserella parasuis strain SC1401

49.126

99.806

0.49
  comM Vibrio campbellii strain DS40M4

49.123

99.419

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.52

100

0.436