Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RZE79_RS01350 Genome accession   NZ_CP138496
Coordinates   293261..294799 (-) Length   512 a.a.
NCBI ID   WP_319358649.1    Uniprot ID   -
Organism   Variovorax sp. EBFNA2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 288261..299799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZE79_RS01340 (RZE79_01340) tagF 290503..291237 (+) 735 WP_319358647.1 type VI secretion system-associated protein TagF -
  RZE79_RS01345 (RZE79_01345) - 291275..293242 (+) 1968 WP_319358648.1 serine/threonine-protein kinase -
  RZE79_RS01350 (RZE79_01350) comM 293261..294799 (-) 1539 WP_319358649.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RZE79_RS01355 (RZE79_01355) - 295017..295880 (+) 864 WP_153281167.1 TorF family putative porin -
  RZE79_RS01360 (RZE79_01360) glnK 295951..296289 (+) 339 WP_056583732.1 P-II family nitrogen regulator -
  RZE79_RS01365 (RZE79_01365) - 296319..297752 (+) 1434 WP_319358651.1 ammonium transporter -
  RZE79_RS01370 (RZE79_01370) - 297960..298889 (+) 930 WP_319358652.1 SMP-30/gluconolactonase/LRE family protein -
  RZE79_RS01375 (RZE79_01375) - 298908..299795 (+) 888 WP_153281164.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53967.59 Da        Isoelectric Point: 8.5284

>NTDB_id=903153 RZE79_RS01350 WP_319358649.1 293261..294799(-) (comM) [Variovorax sp. EBFNA2]
MSLSLVQSRALLGLEAAAVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLDFPTNKKIVVNLAPADLPKDSG
RFDLPIALGILAASGQIENHRLAGHEFAGELSLSGELRPVRGALAMAVATYTQGTAVRLVLPMDSAHEAALVPGAEVFGA
RHLLDVVRQFVASGGGPVDASDDGWARVRAAPGDGAPRYADLADVKGHTGAKRALEIAAAGGHSLLMVGEPGSGKSMLAH
RFAGLLPPMNVDEALESAAIASLDGRLSPERWMSRPTATPHHTASAVALVGGGSPPRPGEISRAHHGVLFLDEFPEFTRA
ALEALREPLETGTITITRAARRAEFPARFQLIAAMNPCPCGYLGSTLKPCRCTPERVARYQSKLSGPLLDRIDLHIEVAA
VSAPQLLDAPAGESTDSIRARVVSARERALRRQGHANQALQGRAIDTHAVLDSAARHLLQQAAARLGWSARSTHRALKVA
RTIADLAAEDAVQVAHVAEAVQYRRALRTGAP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=903153 RZE79_RS01350 WP_319358649.1 293261..294799(-) (comM) [Variovorax sp. EBFNA2]
ATGAGTCTGTCTTTGGTGCAAAGCCGCGCCTTGCTCGGCCTGGAAGCCGCCGCCGTCACGGTCGAGGTGCATCTGGCGAA
CGGCCTGCCGAGCTTCACTTTGGTCGGGCTGGCCGAGACGGAGGTCAAGGAAGCGCGCGAACGCGTGCGCTCGGCGATCC
AGAACGCCGGCCTCGACTTCCCGACGAACAAGAAGATCGTCGTCAACCTTGCGCCCGCTGATTTGCCGAAGGACTCGGGC
CGCTTCGACCTGCCCATCGCCCTGGGCATCCTCGCGGCCAGCGGGCAGATCGAGAACCACCGGCTGGCCGGCCACGAGTT
CGCTGGCGAGCTGTCGCTGTCGGGCGAGCTGCGCCCCGTGCGCGGCGCACTGGCGATGGCCGTGGCCACCTACACGCAAG
GCACGGCCGTGCGGCTGGTGCTGCCCATGGACAGCGCCCACGAGGCCGCGCTGGTGCCGGGTGCCGAGGTGTTCGGGGCC
CGGCACCTGCTCGACGTGGTGCGGCAGTTCGTCGCCAGTGGCGGCGGGCCCGTCGATGCAAGCGACGACGGTTGGGCCCG
CGTGCGCGCCGCGCCCGGCGACGGTGCGCCGCGCTATGCCGACCTGGCCGACGTCAAGGGCCACACCGGCGCCAAGCGCG
CACTCGAGATCGCCGCGGCCGGCGGCCACAGCCTGCTGATGGTGGGCGAGCCGGGCTCGGGCAAGTCGATGCTCGCGCAC
CGCTTCGCCGGCCTGCTGCCGCCGATGAACGTGGACGAGGCGCTGGAAAGCGCGGCCATCGCCAGCCTCGACGGCCGGCT
GTCGCCCGAGCGGTGGATGAGCCGCCCGACGGCCACGCCGCACCACACGGCGAGCGCGGTGGCGCTGGTGGGCGGCGGCT
CGCCGCCGCGGCCGGGCGAAATCTCGCGCGCGCACCACGGCGTTCTGTTTCTGGACGAATTTCCGGAGTTCACGCGCGCC
GCGCTCGAAGCCCTGCGCGAGCCGCTGGAGACCGGCACCATCACGATCACCCGCGCCGCCCGGCGCGCGGAGTTTCCGGC
GCGCTTCCAGCTCATCGCCGCCATGAACCCCTGCCCCTGCGGCTACCTCGGCTCCACGCTGAAGCCCTGCCGCTGCACGC
CCGAGCGCGTCGCGCGCTACCAGAGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCACATCGAAGTGGCGGCG
GTGTCGGCGCCGCAACTGCTCGATGCACCGGCGGGCGAATCGACCGACAGCATCCGGGCGCGCGTGGTGAGCGCGCGCGA
ACGCGCGTTGCGGCGCCAGGGCCATGCGAACCAGGCGCTGCAGGGCCGCGCGATCGACACCCACGCCGTGCTCGACAGCG
CCGCGCGCCATCTGTTGCAGCAGGCGGCCGCGCGGCTGGGCTGGTCGGCGCGCAGCACGCACCGCGCGCTGAAGGTGGCG
CGCACCATCGCCGACCTTGCGGCGGAAGATGCCGTGCAGGTCGCGCATGTGGCGGAGGCGGTGCAGTACCGCCGCGCGCT
GCGCACCGGCGCGCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-403)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.198

98.828

0.496
  comM Legionella pneumophila str. Paris

48.337

99.805

0.482
  comM Legionella pneumophila strain ERS1305867

48.337

99.805

0.482
  comM Glaesserella parasuis strain SC1401

48.425

99.219

0.48
  comM Vibrio campbellii strain DS40M4

48.024

98.828

0.475
  comM Haemophilus influenzae Rd KW20

47.451

99.609

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.031

99.805

0.439