Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SGJ46_RS13555 Genome accession   NZ_CP138461
Coordinates   2809697..2811187 (+) Length   496 a.a.
NCBI ID   WP_329415408.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CZH-5     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2804697..2816187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS13530 ribD 2805609..2806697 (-) 1089 WP_329415394.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  SGJ46_RS13535 nrdR 2806721..2807179 (-) 459 WP_005181550.1 transcriptional regulator NrdR -
  SGJ46_RS13540 - 2807319..2808722 (-) 1404 WP_005181548.1 ammonium transporter -
  SGJ46_RS13545 glnK 2808785..2809123 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  SGJ46_RS13550 - 2809400..2809627 (+) 228 WP_005181545.1 accessory factor UbiK family protein -
  SGJ46_RS13555 comM 2809697..2811187 (+) 1491 WP_329415408.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SGJ46_RS13560 - 2811261..2812022 (-) 762 WP_286391458.1 TorF family putative porin -
  SGJ46_RS13565 - 2812780..2814108 (+) 1329 WP_329415412.1 OprD family outer membrane porin -
  SGJ46_RS13570 ppa 2814211..2814735 (-) 525 WP_005181532.1 inorganic diphosphatase -
  SGJ46_RS13575 - 2814853..2815254 (-) 402 WP_005181530.1 MAPEG family protein -
  SGJ46_RS13580 - 2815358..2815744 (+) 387 WP_045795369.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54119.05 Da        Isoelectric Point: 7.3595

>NTDB_id=902944 SGJ46_RS13555 WP_329415408.1 2809697..2811187(+) (comM) [Acinetobacter indicus strain CZH-5]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAENLEFIGELALDGQLRPVTGTLSIAIACQAADHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLQAHELHDKTAVE
NSDTVRQRVIQAYERQMQRQGMLNMNLSPKQLEQFAALATPAQNMMDLAQQRLNLSARAYHRVLRVARSIADLAESSEIQ
TAHLSEALSYRAQSSP

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=902944 SGJ46_RS13555 WP_329415408.1 2809697..2811187(+) (comM) [Acinetobacter indicus strain CZH-5]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCCATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGATTTACCCAAAGATGGCTCACGT
CTGGATTTACCGATTGCCTTAGGCATTCTGATTGCTTCCGGACAATTGCCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAGTTACGCCCGGTCACCGGCACTTTAAGTATTGCCATTGCCTGTCAGGCGGCCGACC
ATCAACTGGTATTACCGGAACCCAATGCACAGGAAGCCGCACAATTGCCCGACTTTCAGGTGTTTGCGGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCCCTACAGCCTTTTGCAGCAAGCTCGGAAACCCGCTTGGAACGCTA
TGCTTTTGACCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCCGGTGGCCATTCCT
TGCTCTTTAAAGGTCCACCCGGTACAGGCAAAACCCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATTTATTCAATTGCCAATACCCCGCATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCGCTGGTCGGTGGTGGCTCACATCCAAAACCGGGCGAAATTACCCTGGCCCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAGGAA
ATTGTAATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCATTTAATCAGGATATTCGCTGCCAATGTTCCGCAGAAAGTATTAAACGCTACCAGAACCGCATTTCTGGCC
CACTCCTGGACCGGATTGATTTGCATATTGATGTACCGCCATTACAGGCCCATGAGTTACATGATAAAACTGCGGTGGAA
AATTCAGATACGGTTCGCCAGCGGGTAATTCAGGCCTATGAACGGCAGATGCAACGTCAAGGTATGCTGAATATGAACTT
AAGTCCAAAACAGCTGGAACAGTTTGCTGCCTTAGCCACACCAGCACAGAACATGATGGATCTGGCCCAGCAGCGCTTAA
ACCTGTCGGCTCGCGCCTATCATCGGGTCTTAAGAGTGGCGCGCAGTATTGCCGATTTGGCCGAAAGTAGCGAGATTCAA
ACTGCTCATTTATCGGAAGCGCTGTCTTATCGGGCGCAGTCCAGCCCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.508
  comM Legionella pneumophila str. Paris

50.806

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.806

100

0.508
  comM Glaesserella parasuis strain SC1401

50

100

0.504
  comM Haemophilus influenzae Rd KW20

49.9

100

0.504
  comM Vibrio campbellii strain DS40M4

50.202

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.47