Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ABI424_RS03830 Genome accession   NZ_CP157211
Coordinates   843654..844268 (-) Length   204 a.a.
NCBI ID   WP_011608423.1    Uniprot ID   B0UVK3
Organism   Histophilus somni strain 23-038383_S91     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 838654..849268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI424_RS03810 (ABI424_000764) putP 838832..840346 (+) 1515 WP_348534026.1 sodium/proline symporter PutP -
  ABI424_RS03815 (ABI424_000765) cmoB 840349..841314 (+) 966 WP_012340593.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  ABI424_RS03820 (ABI424_000766) - 841314..842522 (+) 1209 WP_012340582.1 NAD(P)/FAD-dependent oxidoreductase -
  ABI424_RS03825 (ABI424_000767) ruvB 842636..843643 (-) 1008 WP_011608424.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ABI424_RS03830 (ABI424_000768) ruvA 843654..844268 (-) 615 WP_011608423.1 Holliday junction branch migration protein RuvA Machinery gene
  ABI424_RS03835 (ABI424_000769) recC 844347..847781 (-) 3435 WP_012340558.1 exodeoxyribonuclease V subunit gamma -
  ABI424_RS03840 (ABI424_000770) comQ 847834..848151 (-) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  ABI424_RS03845 (ABI424_000771) comP 848132..848812 (-) 681 WP_011608420.1 DUF2572 family protein Machinery gene

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22637.63 Da        Isoelectric Point: 8.0493

>NTDB_id=902906 ABI424_RS03830 WP_011608423.1 843654..844268(-) (ruvA) [Histophilus somni strain 23-038383_S91]
MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLLFGFSHKQDRSLFRELIKTNG
VGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKTAERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKLDQSLQ
LDEAVSALIALGYKPIEAEKMVKKVLKADLTSEQLIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=902906 ABI424_RS03830 WP_011608423.1 843654..844268(-) (ruvA) [Histophilus somni strain 23-038383_S91]
ATGATTGGGCGTGTAACAGGAATACTGGTTGAAAAACAAGCTCCGGAAATTTTACTGGATGTTCAAGGTGTTGGGTATGA
GTTACTTTTACCCATGACAAGTTTTTATAATTTGCCGGAAGTTGGGCAGGAAACTACGTTGTTTACGCATTTTGTGGTGC
GTGAAGATGCTCATTTGTTATTTGGATTTAGCCATAAACAAGACCGCTCTTTATTTCGTGAATTGATTAAAACCAATGGA
GTTGGACCAAAATTAGCTTTAGCTATCCTGTCTGCGATGTCAGTGAATGAATTTGTGTATGCGATTGAACAAGAAGAATT
ATCTAAATTAGTCAAAATTCCCGGAGTAGGAAAAAAAACTGCTGAACGTTTATTGGTGGAGCTAAAAGGTAAATTTAAAG
GCTTACAACAAACAGATTTCTTTATTAAAAGCTCTCATTTACCTGGAATTAAATGCTCAAAACTGGATCAAAGTTTGCAG
TTGGATGAAGCAGTTTCTGCTTTAATTGCGTTAGGATATAAGCCTATTGAAGCAGAGAAAATGGTTAAAAAAGTGTTAAA
AGCAGATTTAACTAGTGAACAGCTTATTCGAGAGGCTTTGAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-202)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UVK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.321

100

0.382
  ruvA Streptococcus pneumoniae TIGR4

36.765

100

0.368
  ruvA Streptococcus pneumoniae R6

36.765

100

0.368
  ruvA Streptococcus pneumoniae D39

36.765

100

0.368