Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SGJ46_RS00835 Genome accession   NZ_CP138461
Coordinates   182714..183280 (+) Length   188 a.a.
NCBI ID   WP_177156127.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CZH-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 183869..186699 182714..183280 flank 589


Gene organization within MGE regions


Location: 182714..186699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS00835 ssb 182714..183280 (+) 567 WP_177156127.1 single-stranded DNA-binding protein Machinery gene
  SGJ46_RS00840 - 183436..183816 (+) 381 Protein_162 site-specific integrase -
  SGJ46_RS00845 - 183869..184573 (-) 705 WP_001067784.1 IS6-like element IS1006 family transposase -
  SGJ46_RS00850 - 184637..185917 (-) 1281 WP_005237495.1 cation transporter -
  SGJ46_RS00855 cadR 186007..186399 (+) 393 WP_000550240.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  SGJ46_RS00860 - 186493..186654 (+) 162 Protein_166 IS6 family transposase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20670.41 Da        Isoelectric Point: 6.4819

>NTDB_id=902908 SGJ46_RS00835 WP_177156127.1 182714..183280(+) (ssb) [Acinetobacter indicus strain CZH-5]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRQQGEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=902908 SGJ46_RS00835 WP_177156127.1 182714..183280(+) (ssb) [Acinetobacter indicus strain CZH-5]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCCATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCGCTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTAGTCGTCAGCAAGGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGCGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGCGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCGGCAGATTTGGATGATGACTTACC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.546

100

0.532
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

37.368

100

0.378
  ssb Neisseria gonorrhoeae MS11

37.368

100

0.378