Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ABI424_RS03840 Genome accession   NZ_CP157211
Coordinates   847834..848151 (-) Length   105 a.a.
NCBI ID   WP_012340547.1    Uniprot ID   A0A9Q6K6P7
Organism   Histophilus somni strain 23-038383_S91     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 842834..853151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI424_RS03830 (ABI424_000768) ruvA 843654..844268 (-) 615 WP_011608423.1 Holliday junction branch migration protein RuvA Machinery gene
  ABI424_RS03835 (ABI424_000769) recC 844347..847781 (-) 3435 WP_012340558.1 exodeoxyribonuclease V subunit gamma -
  ABI424_RS03840 (ABI424_000770) comQ 847834..848151 (-) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  ABI424_RS03845 (ABI424_000771) comP 848132..848812 (-) 681 WP_011608420.1 DUF2572 family protein Machinery gene
  ABI424_RS03850 (ABI424_000772) comO 848815..849492 (-) 678 WP_080514398.1 type II secretion system protein J Machinery gene
  ABI424_RS03855 (ABI424_000773) comN 849541..850068 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABI424_RS03875 (ABI424_000777) pal 850743..851198 (-) 456 WP_012340512.1 peptidoglycan-associated lipoprotein Pal -
  ABI424_RS03880 (ABI424_000778) tolB 851208..852512 (-) 1305 WP_012340504.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12552.55 Da        Isoelectric Point: 9.7112

>NTDB_id=902907 ABI424_RS03840 WP_012340547.1 847834..848151(-) (comQ) [Histophilus somni strain 23-038383_S91]
MIFNHYKFPQRGTSLITLLVTMMIFSTLFLFVNQWVSYQRKSAVNIYLRYQALQIAENQHQRLFLEPHFHCPHNIEQNGY
KFKINCEGKNVRVSYANQQVNLLLD

Nucleotide


Download         Length: 318 bp        

>NTDB_id=902907 ABI424_RS03840 WP_012340547.1 847834..848151(-) (comQ) [Histophilus somni strain 23-038383_S91]
ATGATTTTCAACCATTATAAATTTCCTCAACGGGGTACCAGCTTGATCACGTTATTAGTCACAATGATGATATTTTCTAC
ATTATTTTTATTTGTTAATCAATGGGTTAGTTATCAAAGAAAAAGTGCGGTAAATATTTATCTACGTTATCAAGCTTTGC
AAATCGCTGAAAATCAACATCAACGCTTATTTCTAGAACCGCATTTTCATTGTCCGCATAATATCGAGCAAAATGGTTAT
AAGTTTAAGATCAATTGTGAAGGTAAGAATGTACGAGTTTCTTATGCAAATCAACAAGTAAATTTATTGCTTGATTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6K6P7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

46.667

85.714

0.4