Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SGJ46_RS01470 Genome accession   NZ_CP138461
Coordinates   307914..308549 (+) Length   211 a.a.
NCBI ID   WP_329416180.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CZH-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302914..313549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS01455 - 303263..304066 (+) 804 WP_016658442.1 putative RNA methyltransferase -
  SGJ46_RS01460 ponA 304108..306684 (-) 2577 WP_329416175.1 penicillin-binding protein PBP1a -
  SGJ46_RS01465 pilM 306856..307914 (+) 1059 WP_329416178.1 pilus assembly protein PilM Machinery gene
  SGJ46_RS01470 pilN 307914..308549 (+) 636 WP_329416180.1 PilN domain-containing protein Machinery gene
  SGJ46_RS01475 pilO 308546..309265 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  SGJ46_RS01480 pilP 309265..309792 (+) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  SGJ46_RS01485 pilQ 309853..311991 (+) 2139 WP_177156229.1 type IV pilus secretin PilQ Machinery gene
  SGJ46_RS01490 aroK 312028..312570 (+) 543 WP_075167858.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23566.95 Da        Isoelectric Point: 6.9912

>NTDB_id=902910 SGJ46_RS01470 WP_329416180.1 307914..308549(+) (pilN) [Acinetobacter indicus strain CZH-5]
MAKINLLPWRDELREKRKKEFIAVCIGAALIGVLAVTLAWFYYNHKLQDQEQANQLVISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQSQRPVAVRLVDELVRVTPSSMYLTKVARIGNKFTFEGKAESPNTVAEFLRNLEASPWYRNAFMNSFLA
VEENKNRAPSSVVPRVEESYGSFVVTADLDEIALPGTAPASGTQETAGGVQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=902910 SGJ46_RS01470 WP_329416180.1 307914..308549(+) (pilN) [Acinetobacter indicus strain CZH-5]
ATGGCAAAAATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAAAAACGAAAAAAAGAATTTATTGCGGTTTGTATTGG
GGCTGCATTAATTGGGGTGCTGGCCGTGACGCTGGCATGGTTCTATTACAATCATAAACTGCAGGATCAGGAACAGGCCA
ATCAGCTGGTGATCAGTACCAACCAAAATCTGGATGTACAGTTAAAGTCGCTGGAAGGTCTGCAAGAGCAGCGTAATGCC
ATTGTCGAGCGCATGAAGCTGATTCAGGGTCTGCAAAGTCAGCGTCCGGTCGCGGTACGTTTGGTCGATGAGCTGGTCCG
CGTTACCCCAAGTAGCATGTATTTGACCAAAGTGGCCCGTATTGGCAATAAATTTACCTTTGAAGGCAAGGCCGAAAGTC
CAAACACGGTAGCAGAGTTCCTGCGTAATCTGGAAGCATCGCCATGGTATCGTAACGCCTTCATGAATTCTTTCTTGGCC
GTTGAAGAAAATAAAAACAGGGCACCAAGTTCGGTTGTTCCACGGGTAGAAGAAAGCTATGGCAGCTTCGTGGTAACGGC
AGATTTGGATGAAATTGCACTTCCAGGCACAGCACCTGCGTCTGGTACTCAAGAAACAGCGGGGGGAGTACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.953

100

0.706
  comN Acinetobacter baylyi ADP1

70.142

100

0.701