Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ABI424_RS03850 Genome accession   NZ_CP157211
Coordinates   848815..849492 (-) Length   225 a.a.
NCBI ID   WP_080514398.1    Uniprot ID   -
Organism   Histophilus somni strain 23-038383_S91     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 843815..854492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI424_RS03835 (ABI424_000769) recC 844347..847781 (-) 3435 WP_012340558.1 exodeoxyribonuclease V subunit gamma -
  ABI424_RS03840 (ABI424_000770) comQ 847834..848151 (-) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  ABI424_RS03845 (ABI424_000771) comP 848132..848812 (-) 681 WP_011608420.1 DUF2572 family protein Machinery gene
  ABI424_RS03850 (ABI424_000772) comO 848815..849492 (-) 678 WP_080514398.1 type II secretion system protein J Machinery gene
  ABI424_RS03855 (ABI424_000773) comN 849541..850068 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABI424_RS03875 (ABI424_000777) pal 850743..851198 (-) 456 WP_012340512.1 peptidoglycan-associated lipoprotein Pal -
  ABI424_RS03880 (ABI424_000778) tolB 851208..852512 (-) 1305 WP_012340504.1 Tol-Pal system beta propeller repeat protein TolB -
  ABI424_RS03885 (ABI424_000779) tolA 852540..853595 (-) 1056 WP_012340495.1 cell envelope integrity protein TolA -
  ABI424_RS03890 (ABI424_000780) tolR 853614..854036 (-) 423 WP_011608414.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25781.51 Da        Isoelectric Point: 8.8841

>NTDB_id=902909 ABI424_RS03850 WP_080514398.1 848815..849492(-) (comO) [Histophilus somni strain 23-038383_S91]
MIALSLSMMLLMSVSAFYSYSQQQNKQILLHLYLQSELQRTIQLLGKDIRRSGFRAISDKLVRSNFDLFAQDKSGKSIVV
AQADNEPPNSCVLFIYDLDATGCVGTTYRNNVCVRNKQNTAREIERELFGYRLNKQMIETRLTYKNSISANCNQKQCQSY
LQQPACNSGGWVDLLDENDIAITALKFNWIADYNGLEVYLKGHLKRNKQVEYETSAIIPLLNQKR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=902909 ABI424_RS03850 WP_080514398.1 848815..849492(-) (comO) [Histophilus somni strain 23-038383_S91]
ATGATAGCGTTGAGCTTATCAATGATGTTATTAATGAGTGTTAGTGCATTTTATAGTTATAGTCAGCAACAAAATAAACA
GATACTTTTGCATCTCTATTTACAATCAGAATTGCAACGAACTATCCAACTTTTGGGTAAGGATATTCGCCGTAGTGGAT
TTAGGGCTATTAGTGATAAATTGGTTCGGAGTAATTTCGATTTATTTGCACAAGATAAAAGCGGAAAGAGTATTGTAGTC
GCTCAAGCTGATAATGAACCCCCGAATAGTTGCGTTCTTTTTATTTATGATCTTGATGCTACCGGCTGTGTAGGTACGAC
ATATCGTAATAATGTTTGTGTAAGGAATAAACAAAATACAGCTCGTGAAATTGAGCGAGAGTTATTTGGTTATCGCTTAA
ATAAACAAATGATAGAGACAAGATTAACTTATAAAAATTCAATTAGCGCGAATTGTAATCAAAAACAATGCCAAAGCTAT
TTACAACAACCTGCATGTAATAGCGGAGGATGGGTCGATTTATTAGATGAAAATGACATAGCCATAACTGCATTAAAATT
TAATTGGATTGCTGATTACAATGGATTGGAAGTTTATCTAAAAGGGCATCTAAAGCGAAATAAACAAGTCGAATATGAGA
CTTCAGCCATTATTCCTTTGCTTAATCAAAAGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

50.718

92.889

0.471