Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   SGJ46_RS01465 Genome accession   NZ_CP138461
Coordinates   306856..307914 (+) Length   352 a.a.
NCBI ID   WP_329416178.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CZH-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301856..312914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS01450 mraY 302079..303197 (+) 1119 WP_005180530.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  SGJ46_RS01455 - 303263..304066 (+) 804 WP_016658442.1 putative RNA methyltransferase -
  SGJ46_RS01460 ponA 304108..306684 (-) 2577 WP_329416175.1 penicillin-binding protein PBP1a -
  SGJ46_RS01465 pilM 306856..307914 (+) 1059 WP_329416178.1 pilus assembly protein PilM Machinery gene
  SGJ46_RS01470 pilN 307914..308549 (+) 636 WP_329416180.1 PilN domain-containing protein Machinery gene
  SGJ46_RS01475 pilO 308546..309265 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  SGJ46_RS01480 pilP 309265..309792 (+) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  SGJ46_RS01485 pilQ 309853..311991 (+) 2139 WP_177156229.1 type IV pilus secretin PilQ Machinery gene
  SGJ46_RS01490 aroK 312028..312570 (+) 543 WP_075167858.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38953.60 Da        Isoelectric Point: 4.5587

>NTDB_id=902909 SGJ46_RS01465 WP_329416178.1 306856..307914(+) (pilM) [Acinetobacter indicus strain CZH-5]
MRRLYRKPSKGLIGVDISSTSVKLLELSVKNDRYWVESYALVPLPEGSVVEKNILNPEAVGDALERAFNLANTPTTAAAL
AIPTSMVISKTIEMDADMTDDEREVQIRMDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRLENVESRCEAIEL
AGLTPKVADVESFAVENAFKVFADTLPMGVNTIGVLDIGHTMTTLSVLKDNKIIYTREQVFGGKQLTQEIQNRYGLSFEE
AGRAKKSRTLPDDYDVEVLEPFLEAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSSKIDIKRIESDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=902909 SGJ46_RS01465 WP_329416178.1 306856..307914(+) (pilM) [Acinetobacter indicus strain CZH-5]
GTGCGCAGGTTATATCGTAAACCGAGTAAGGGGTTAATAGGTGTAGATATTAGTTCTACTTCTGTTAAGTTATTGGAGCT
CTCTGTAAAGAATGATCGTTACTGGGTGGAAAGTTACGCCTTGGTACCGCTCCCAGAGGGCAGTGTGGTTGAGAAAAATA
TTCTGAATCCTGAAGCTGTAGGGGATGCGCTCGAGCGTGCCTTTAATTTGGCCAATACACCGACAACAGCTGCCGCTTTA
GCGATTCCAACCTCAATGGTAATTAGCAAGACCATTGAGATGGATGCCGATATGACGGATGACGAACGTGAAGTTCAAAT
CCGGATGGATGCAGAGCAATATATTCCTTTCCCATTAGATGAAGTTAGCCTGGACTTTGAGGTGCTGCCTGATCGTCTGG
CCAATCCAAACCGGGTCAATGTTTTGCTGGTGGCGACACGACTGGAAAATGTCGAGAGTCGCTGTGAAGCGATTGAACTG
GCCGGTTTAACCCCAAAAGTGGCAGATGTCGAAAGCTTTGCCGTTGAAAATGCCTTTAAAGTCTTCGCCGATACCTTGCC
GATGGGGGTAAATACCATTGGTGTGTTAGACATTGGTCATACTATGACCACGCTGTCGGTACTCAAAGACAATAAAATTA
TCTATACCCGCGAGCAAGTCTTTGGTGGCAAGCAGCTGACCCAGGAAATCCAGAACCGTTATGGTCTGTCCTTTGAAGAA
GCCGGCCGCGCCAAGAAAAGCCGTACCTTGCCAGATGATTATGATGTTGAAGTGTTGGAGCCATTTCTTGAGGCGGTGGT
GCAGCAGGCGGCACGTTCGCTGCAGTTCTTCTTCTCCTCATCGCAGTTTAATGAAATTGACCATATTCTGCTGGCCGGTG
GGAATGCCAATATTCCGGGTCTAGCCAAGCTACTACAGCAAAAACTGGGTTACCGCGTCACCATTGCCAATCCGTTTTTA
CAGATGGGTTTCTCCTCCAAAATTGATATTAAAAGAATTGAAAGCGATGCCTCTTCATTGATGGTGGCATGTGGCTTGGC
ATTGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

84.659

100

0.847
  comM Acinetobacter nosocomialis M2

84.659

100

0.847
  comM Acinetobacter baylyi ADP1

78.693

100

0.787
  pilM Legionella pneumophila strain ERS1305867

41.525

100

0.418