Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SGJ46_RS01475 Genome accession   NZ_CP138461
Coordinates   308546..309265 (+) Length   239 a.a.
NCBI ID   WP_005180513.1    Uniprot ID   N9KYM2
Organism   Acinetobacter indicus strain CZH-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303546..314265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS01460 ponA 304108..306684 (-) 2577 WP_329416175.1 penicillin-binding protein PBP1a -
  SGJ46_RS01465 pilM 306856..307914 (+) 1059 WP_329416178.1 pilus assembly protein PilM Machinery gene
  SGJ46_RS01470 pilN 307914..308549 (+) 636 WP_329416180.1 PilN domain-containing protein Machinery gene
  SGJ46_RS01475 pilO 308546..309265 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  SGJ46_RS01480 pilP 309265..309792 (+) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  SGJ46_RS01485 pilQ 309853..311991 (+) 2139 WP_177156229.1 type IV pilus secretin PilQ Machinery gene
  SGJ46_RS01490 aroK 312028..312570 (+) 543 WP_075167858.1 shikimate kinase AroK -
  SGJ46_RS01495 aroB 312593..313675 (+) 1083 WP_168398886.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27087.71 Da        Isoelectric Point: 5.1311

>NTDB_id=902911 SGJ46_RS01475 WP_005180513.1 308546..309265(+) (pilO) [Acinetobacter indicus strain CZH-5]
MSLDQYEEMNQDPVAAPKKKMTLDKFLQQWNTLDPNNYGSWPFSVKLTIWIFIIILIAFLGYFLAIKPKLDAISNARAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLQQLPKETEIPGLVEDVNVTGVNSGLRFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFTITAGENKEKKTDIPQITYVAKAKTYRYVGNTDAQAGNSTTPATGAAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=902911 SGJ46_RS01475 WP_005180513.1 308546..309265(+) (pilO) [Acinetobacter indicus strain CZH-5]
ATGAGTCTCGATCAATATGAAGAAATGAATCAGGATCCTGTTGCTGCGCCAAAGAAAAAAATGACGCTGGATAAATTCCT
GCAGCAATGGAATACCTTAGATCCGAATAACTATGGCAGCTGGCCGTTTTCCGTCAAGCTGACCATCTGGATCTTTATTA
TTATTTTAATTGCCTTCCTGGGCTATTTCCTGGCCATCAAGCCGAAGCTGGATGCAATTTCCAATGCGCGTGCACAAGAG
CAGAACCTGCTGAATGAGTTTCGTGAAAAAGATTCCAAACTGCGTAACTTGCAGCAATATCAGGCGCAGTTACAGGAAAT
GGAAGCCAACTTTAACCAGCAGCTACAACAGTTGCCAAAAGAAACCGAAATTCCAGGTCTGGTTGAAGATGTCAACGTTA
CGGGCGTGAATTCAGGCTTAAGATTTAAAAATATCCGTCTGGAAAATGAAATCAAGCAAGAGTTCTTTATCGAGCAGCCA
ATTTCGATTGAAGCCACCGGTGATTATCATGCTTTTGGTTCTTTTGTGAGCGGTACAGCCGCTTTACCGCGAATTGTGAC
CATGCATGATTTCACTATTACTGCCGGTGAAAACAAGGAAAAGAAAACCGATATTCCACAAATTACCTATGTCGCGAAAG
CCAAGACCTATCGCTATGTCGGGAATACCGATGCACAGGCCGGGAATAGCACGACTCCAGCCACAGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KYM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

69.748

99.582

0.695
  comO Acinetobacter baylyi ADP1

67.213

100

0.686