Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SE691_RS21445 Genome accession   NZ_CP138440
Coordinates   4440037..4440561 (-) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter cloacae strain 53EVA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4435037..4445561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE691_RS21420 - 4435592..4436263 (-) 672 WP_058682387.1 glutathione S-transferase family protein -
  SE691_RS21425 soxR 4436579..4437037 (-) 459 WP_013095072.1 redox-sensitive transcriptional activator SoxR -
  SE691_RS21430 soxS 4437135..4437461 (+) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  SE691_RS21435 - 4437468..4439033 (-) 1566 WP_319077689.1 EAL domain-containing protein -
  SE691_RS21440 - 4439693..4439974 (+) 282 WP_058680840.1 YjcB family protein -
  SE691_RS21445 ssb 4440037..4440561 (-) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SE691_RS21450 uvrA 4440813..4443635 (+) 2823 WP_013095069.1 excinuclease ABC subunit UvrA -
  SE691_RS21455 - 4443639..4443992 (-) 354 WP_013095068.1 MmcQ/YjbR family DNA-binding protein -
  SE691_RS21460 - 4443995..4444411 (-) 417 WP_013095067.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SE691_RS21465 aphA 4444524..4445237 (-) 714 WP_013095066.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=902829 SE691_RS21445 WP_003860284.1 4440037..4440561(-) (ssb) [Enterobacter cloacae strain 53EVA]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=902829 SE691_RS21445 WP_003860284.1 4440037..4440561(-) (ssb) [Enterobacter cloacae strain 53EVA]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTATATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAGTACACCACTGAAGTGGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCTCCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCCGCTCCGGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374