Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SE691_RS00610 Genome accession   NZ_CP138440
Coordinates   133161..134681 (-) Length   506 a.a.
NCBI ID   WP_058682098.1    Uniprot ID   -
Organism   Enterobacter cloacae strain 53EVA     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 128161..139681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE691_RS00600 hdfR 131850..132671 (-) 822 WP_020685959.1 HTH-type transcriptional regulator HdfR -
  SE691_RS00605 - 132790..133128 (+) 339 WP_013099290.1 DUF413 domain-containing protein -
  SE691_RS00610 comM 133161..134681 (-) 1521 WP_058682098.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SE691_RS00615 ilvL 135023..135121 (+) 99 WP_023620831.1 ilv operon leader peptide -
  SE691_RS00620 ilvX 135208..135258 (+) 51 WP_102046757.1 peptide IlvX -
  SE691_RS00625 ilvG 135261..136907 (+) 1647 WP_023620832.1 acetolactate synthase 2 catalytic subunit -
  SE691_RS00630 ilvM 136904..137167 (+) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  SE691_RS00635 ilvE 137186..138115 (+) 930 WP_058682099.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54985.02 Da        Isoelectric Point: 7.4367

>NTDB_id=902812 SE691_RS00610 WP_058682098.1 133161..134681(-) (comM) [Enterobacter cloacae strain 53EVA]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTARLGSYEFIGELALTGALRGVPGAISGALEAIHAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAHLEGRHTLSEPEETGDILPESPDDLSDIIGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPSGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQTTIRG
ESTAKVRERVIASQARQYARQHKLNARLDNAEIRQFCHLKAEDACWLEETLTRFGLSIRAWQRLLKVARTIADVKGDPEI
ERHHLQEALSYRAIDRLLLHMQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=902812 SE691_RS00610 WP_058682098.1 133161..134681(-) (comM) [Enterobacter cloacae strain 53EVA]
ATGTCACTGTCAGTTGTTTACACGCGTGCGGCGATCGGAGTAAAGGCACCGCTTATTTCTGTGGAGGTTCATCTGAGTAA
TGGGCTCCCTGGGCTAACGCTTGTCGGCTTGCCAGAAACCACGGTCAAAGAAGCCAGAGATCGGGTTCGCAGCGCAATTA
TCAATAGCGGTTATACCTTCCCCGCCAAGAAGATCACGATCAACCTTGCTCCCGCAGATCTGCCCAAGGAGGGCGGACGA
TACGATTTACCTATCGCTATTGCGCTTCTCGCAGCCTCTGAGCAGCTCAACACTGCGAGGCTAGGCTCGTACGAGTTCAT
TGGCGAACTGGCGCTTACAGGCGCGTTAAGAGGCGTTCCTGGCGCCATCTCTGGTGCGCTGGAAGCCATTCATGCCGGTC
GACAAATTATTGTAGCCAATGAAAATGCCTCAGAAGTGAGCCTGATTGCCGAGAAAGGGTGCCTGGTCGCGGGGCATTTA
CAGGAAGTCTGCGCGCACCTTGAAGGCCGACATACGCTCTCCGAGCCAGAGGAAACCGGAGATATCCTGCCTGAAAGCCC
GGACGACCTCAGCGATATTATCGGGCAGGAGCAGGGGAAGCGGGCGCTGGAGATCACCGCAGCCGGAGGACATAACCTGT
TGCTGATTGGCCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCAGGCTGAATGGGTTATTGCCACCACTCAATAATCAT
GAGGCACTTGAAAGCGCAGCGATATTTAGCCTGGTGAGCTCTGCATCATTGCAAAAACAGTGGCGACGACGCCCTTTTCG
CTCTCCCCATCACAGTGCCTCCCTGACGGCCATGGTCGGAGGGGGCTCCATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATCCTGTTCCTTGATGAACTGCCTGAGTTTGAACGCCGCGTACTGGATGCCCTGCGGGAACCTATCGAATCT
GGCGAGATCCATATCTCCCGCACACGCGCCAAAATAAGCTACCCGGCACAGTTCCAGCTGGTTGCCGCCATGAACCCCAG
CCCATCAGGCCATTATCAGGGAAATCATAATCGCTGCACGCCTGAGCAGACGCTGCGCTATCTGGGGAAGCTGTCAGGCC
CTTTCCTCGATCGTTTTGATTTATCCCTGGAGATCCCATTACCGCCCCCTGGTTTGCTCAGCCAGACAACGATACGCGGT
GAGAGCACAGCGAAGGTTCGCGAACGGGTTATCGCCTCACAGGCCCGACAGTACGCTCGTCAACATAAGCTGAATGCGCG
TCTGGATAATGCTGAGATTCGGCAGTTTTGCCATCTTAAGGCTGAGGATGCCTGCTGGCTTGAAGAGACATTGACGCGAT
TTGGGCTCTCGATCCGTGCATGGCAGCGCCTGCTGAAAGTGGCTCGCACTATTGCCGATGTGAAAGGAGACCCAGAGATT
GAAAGACACCATCTGCAGGAAGCGCTGAGCTATCGCGCCATAGATCGGTTGTTGCTGCACATGCAAAAATTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.594

100

0.593
  comM Vibrio cholerae strain A1552

59.562

99.209

0.591
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio campbellii strain DS40M4

59.127

99.605

0.589
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439