Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SE337_RS27055 Genome accession   NZ_CP138374
Coordinates   5827706..5829199 (-) Length   497 a.a.
NCBI ID   WP_005757518.1    Uniprot ID   A0A3M4L3P5
Organism   Pseudomonas amygdali pv. sesami strain DFR141     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5822706..5834199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE337_RS27040 (SE337_26880) - 5824169..5825566 (+) 1398 WP_002551491.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  SE337_RS27045 (SE337_26885) - 5825633..5826034 (-) 402 WP_054078483.1 GFA family protein -
  SE337_RS27050 (SE337_26890) - 5826329..5827636 (+) 1308 WP_054078482.1 CitMHS family transporter -
  SE337_RS27055 (SE337_26895) comM 5827706..5829199 (-) 1494 WP_005757518.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SE337_RS27060 (SE337_26900) - 5829377..5829919 (+) 543 WP_054078481.1 GNAT family N-acetyltransferase -
  SE337_RS27065 (SE337_26905) - 5830242..5832824 (+) 2583 Protein_5221 toxin VasX -
  SE337_RS27070 (SE337_26910) - 5832954..5834021 (-) 1068 WP_032685463.1 IS630-like element ISPsy32 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53069.92 Da        Isoelectric Point: 7.7173

>NTDB_id=902501 SE337_RS27055 WP_005757518.1 5827706..5829199(-) (comM) [Pseudomonas amygdali pv. sesami strain DFR141]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQVPLVALQDVECLGELALSGAIRPIQGVLPAALAARAAERTLIIPAVNAEEACLASGLRVIAVSHL
LELVAHFNGRTVIAPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQVPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSTEQVQRYRNKLSGPLLDRIDLHLTVAREATALNPDPTT
SENTASAAAVVAQARERQQRRQGCANAFLDLPGLREHCALSSVDERWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
ITRSHLAEALQYRPSTN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=902501 SE337_RS27055 WP_005757518.1 5827706..5829199(-) (comM) [Pseudomonas amygdali pv. sesami strain DFR141]
ATGTCGCTGGCTATCGTCCATAGTCGTGCCCAGGTCGGGGTGGAAGCCCCGGCGGTTACTGTTGAAGCGCATCTGGCCAA
CGGCCTGCCGGCCCTGACGCTGGTGGGGTTGCCGGAGGGGGCGGTTAAGGAGAGCAAGGACCGGGTGCGCAGTGCCATTC
TCAATTCCGGGTTGGATTTTCCGGCGCGGCGGATCACGCTCAACCTTGCGCCGGCTGATTTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGTTTGCTGGCTGCCAGCGGGCAGGTGCCGCTGGTTGCGTTGCAGGATGTTGAATGCCT
GGGCGAACTGGCGCTGTCGGGGGCGATTCGACCGATTCAGGGGGTGCTGCCTGCTGCGCTCGCGGCGCGTGCTGCGGAGC
GGACGCTGATCATTCCGGCGGTGAATGCGGAGGAAGCGTGTCTGGCCTCGGGGCTGCGGGTGATTGCGGTGAGTCACTTG
CTGGAGCTGGTTGCGCATTTCAACGGGCGCACGGTGATTGCGCCGTATCAGTCCAGCGGCCTGCTGCATCAGCCCAAGCC
GTATCCGGACCTTAGCGAAGTGCAGGGCCAGACTGCCGCGAAGCGTGCGCTGGTGATTGCCGCTGCCGGGGCGCACAACC
TGCTGTTCAGCGGGCCGCCTGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCGGGTTTGTTGCCGCCGCTGGACGAG
CACGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTCGCCAGTCAGGTGCCGCTGACCAGTTGGCCGCAGCGGCCGTTTCG
CCAGCCACATCACTCGGCGTCCGGGCCTGCGCTGGTGGGCGGTGGCAGTCGTCCGCAACCTGGCGAGATCACGTTGGCGC
ATCACGGCGTTTTATTTCTTGATGAACTGCCGGAGTTCGATCGCCGCGTGCTGGAGGTTTTACGCGAACCACTGGAGTCC
GGGCATATCGTGATTTCCCGTGCGCGGGATCGCGTGCGCTTTCCGGCGCGGTTCCAACTGGTGGCAGCGATGAACCCGTG
TCCCTGTGGATATCTTGGTGAGCCGACCGGGCGCTGCCGTTGCTCCACCGAGCAGGTGCAGCGCTATCGCAACAAGCTGT
CCGGCCCGCTGCTGGACCGGATCGATCTGCACCTGACCGTCGCCCGAGAAGCCACAGCCCTCAACCCCGACCCGACCACC
AGTGAGAACACTGCAAGCGCGGCAGCGGTGGTTGCGCAGGCCAGAGAACGGCAGCAACGTCGTCAGGGCTGTGCCAATGC
CTTTCTCGACCTACCGGGGCTGCGCGAGCACTGCGCGCTGTCCAGTGTCGATGAACGCTGGCTGGAGACGGCCTGCGAGC
GCCTGACTCTCTCATTACGTTCGGCGCATCGCCTGCTGAAAGTGGCGCGAACGCTGGCGGATCTGGAGCAGGTGGACGCG
ATCACTCGTAGCCATCTGGCCGAGGCGTTGCAGTATCGGCCCTCAACCAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M4L3P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

53.6

100

0.539
  comM Vibrio campbellii strain DS40M4

53.939

99.598

0.537
  comM Haemophilus influenzae Rd KW20

53.2

100

0.535
  comM Legionella pneumophila str. Paris

48.911

100

0.497
  comM Legionella pneumophila strain ERS1305867

48.911

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.618

100

0.461