Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CTP10_RS01720 Genome accession   NZ_AP025170
Coordinates   364209..364766 (+) Length   185 a.a.
NCBI ID   WP_116317036.1    Uniprot ID   -
Organism   Cupriavidus sp. P-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 359209..369766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTP10_RS01710 (CTP10_R03430) uvrA 359385..362249 (-) 2865 WP_116317034.1 excinuclease ABC subunit UvrA -
  CTP10_RS01715 (CTP10_R03440) - 362682..363932 (+) 1251 WP_116317035.1 MFS transporter -
  CTP10_RS01720 (CTP10_R03450) ssb 364209..364766 (+) 558 WP_116317036.1 single-stranded DNA-binding protein Machinery gene
  CTP10_RS01725 (CTP10_R03460) - 364842..365189 (-) 348 WP_116317037.1 metalloregulator ArsR/SmtB family transcription factor -
  CTP10_RS01730 (CTP10_R03470) - 365471..368371 (+) 2901 WP_116317038.1 DUF4118 domain-containing protein -
  CTP10_RS01735 (CTP10_R03480) kdpE 368372..369067 (+) 696 WP_116317039.1 two-component system response regulator KdpE -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19105.80 Da        Isoelectric Point: 5.9467

>NTDB_id=90242 CTP10_RS01720 WP_116317036.1 364209..364766(+) (ssb) [Cupriavidus sp. P-10]
MASVNKVILVGNLGADPETRYMPSGDAVTNLRLATTDRYKDKQSGEMKEATEWHRVSMFGKLAEIAGQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGSRQGGGGDEGGFGGGGGGGYSRDAQGGGGGGYGGGRGGQGGGQGGGQGGGQ
GGGGARRPQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=90242 CTP10_RS01720 WP_116317036.1 364209..364766(+) (ssb) [Cupriavidus sp. P-10]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTCGGCGCAGACCCCGAAACCCGCTACATGCCCAGCGGCGACGC
CGTCACCAACCTCCGCCTGGCGACCACCGATCGCTACAAGGACAAGCAGTCCGGCGAGATGAAGGAAGCCACCGAGTGGC
ACCGCGTTTCGATGTTCGGCAAGCTGGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCTCGTCGGTCTATATCGAAGGC
CGCATCCGCACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACAAGTACTCGACCGAAATTGTCGCCGACCAGATGCAGAT
GCTGGGCTCGCGCCAGGGCGGCGGCGGTGACGAAGGCGGCTTCGGCGGTGGCGGTGGTGGTGGCTACAGCCGTGACGCGC
AAGGCGGCGGCGGTGGTGGTTACGGCGGCGGCCGTGGCGGCCAGGGCGGTGGCCAAGGCGGCGGCCAGGGCGGTGGCCAG
GGTGGTGGCGGTGCGCGCCGCCCGCAGCAGGCACCGTCGAACGGTTTCGAGGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.832

100

0.535
  ssb Glaesserella parasuis strain SC1401

50.785

100

0.524
  ssb Neisseria gonorrhoeae MS11

43.617

100

0.443
  ssb Neisseria meningitidis MC58

43.85

100

0.443

Multiple sequence alignment