Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CTP10_RS01290 Genome accession   NZ_AP025170
Coordinates   276473..278017 (-) Length   514 a.a.
NCBI ID   WP_116316970.1    Uniprot ID   A0A388RFI3
Organism   Cupriavidus sp. P-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 271473..283017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTP10_RS01265 (CTP10_R02540) - 271840..272397 (+) 558 WP_233527938.1 hypothetical protein -
  CTP10_RS01270 (CTP10_R02550) - 272480..273139 (+) 660 WP_116316967.1 LysE family transporter -
  CTP10_RS01275 (CTP10_R02560) - 273211..273381 (+) 171 WP_199414492.1 hypothetical protein -
  CTP10_RS01280 (CTP10_R02570) nagA 273745..274848 (+) 1104 WP_116316968.1 N-acetylglucosamine-6-phosphate deacetylase -
  CTP10_RS01285 (CTP10_R02580) zwf 274920..276407 (+) 1488 WP_116316969.1 glucose-6-phosphate dehydrogenase -
  CTP10_RS01290 (CTP10_R02590) comM 276473..278017 (-) 1545 WP_116316970.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CTP10_RS01295 (CTP10_R02600) - 278124..278402 (-) 279 WP_029046713.1 accessory factor UbiK family protein -
  CTP10_RS01300 (CTP10_R02610) - 278793..279587 (+) 795 WP_116316971.1 TorF family putative porin -
  CTP10_RS01305 (CTP10_R02620) - 279642..279980 (+) 339 WP_010814843.1 P-II family nitrogen regulator -
  CTP10_RS01310 (CTP10_R02630) amt 280013..281563 (+) 1551 WP_116316972.1 ammonium transporter -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54475.40 Da        Isoelectric Point: 7.9944

>NTDB_id=90239 CTP10_RS01290 WP_116316970.1 276473..278017(-) (comM) [Cupriavidus sp. P-10]
MSLAVLGSRALTGIAAPPVRVETHLANGLPVFTIVGLADTGVRESRERVRAAILNSGYEFPNRRITVNLAPADLPKESGR
FDLAIALGILAASGQIPADALDHHEFAAELSLSGELRPVRGALAMAMGLAQDNAARHGAGAAPRAFLVARDNGSEAALIE
DLAVHAAATLREVCEHLGALPDARLPRAAPAALPQSVASGPDMRDVRGQAQARRAMEVAAAGKHSALLVGPPGTGKSMLA
QRLPGLLPPMSLQEALESAAVMSLTPGGFRTALWGQRSCRAPHHTASGPAMVGGGGNPRPGEISLAHHGVLFLDELPEFD
RRVLEVLREPLESGRITIARANGHADFPASFQFVAAMNPCPCGYLGHPDRPCRCTPDQVRRYQSRISGPMLDRIDLQVEV
PAQDQGEMLDGPPGEPSAAVRERVLAARMLQLTRQGKPNSELGGREIEQHCVPEPQAQALLRGAMTRLAWSARSYFRVLK
VARTIADLEGAAVLSAEHVAEAIQYRRALRMASG

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=90239 CTP10_RS01290 WP_116316970.1 276473..278017(-) (comM) [Cupriavidus sp. P-10]
ATGAGCCTCGCCGTCCTGGGTAGCCGGGCGCTGACCGGGATCGCGGCGCCGCCGGTGCGCGTCGAGACCCACCTGGCCAA
CGGCCTGCCGGTCTTCACCATCGTCGGGCTGGCCGACACCGGCGTGCGCGAGAGCCGCGAGCGCGTGCGCGCCGCCATCC
TCAACAGCGGCTACGAGTTCCCCAACCGCCGCATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAGTCCGGCCGC
TTCGACCTGGCGATCGCGCTGGGCATCCTGGCCGCCAGCGGCCAGATCCCGGCCGATGCGCTCGACCACCATGAATTCGC
CGCCGAGCTGTCCCTGTCCGGCGAGTTGCGGCCGGTGCGCGGCGCGTTGGCCATGGCGATGGGCCTGGCGCAGGACAACG
CCGCGCGCCACGGGGCCGGCGCCGCCCCACGCGCGTTCCTGGTGGCCCGCGACAACGGCTCCGAAGCGGCCTTGATCGAA
GACCTGGCGGTCCACGCCGCCGCCACGCTGCGCGAGGTGTGCGAGCACCTCGGCGCCCTGCCCGACGCCCGCCTGCCGCG
CGCCGCCCCCGCCGCGCTGCCGCAATCGGTTGCCAGCGGCCCCGACATGCGCGACGTGCGCGGCCAGGCGCAGGCGCGCC
GAGCCATGGAAGTGGCAGCCGCAGGCAAGCACTCGGCCCTGCTGGTCGGCCCGCCCGGCACCGGCAAGTCGATGCTGGCC
CAGCGCCTGCCGGGCCTGCTGCCGCCGATGTCGCTGCAGGAAGCACTGGAATCCGCCGCGGTCATGAGCCTGACGCCCGG
CGGCTTCCGTACCGCGCTGTGGGGCCAGCGCTCCTGCCGCGCGCCGCACCACACCGCGTCGGGCCCGGCCATGGTTGGCG
GCGGCGGCAACCCGCGCCCCGGCGAGATCTCGCTGGCGCACCACGGTGTGCTGTTCCTGGATGAACTGCCGGAGTTCGAC
CGCCGCGTGCTGGAAGTCCTGCGCGAGCCGCTGGAATCCGGGCGCATCACCATCGCCCGCGCCAACGGGCATGCCGACTT
CCCTGCCAGCTTCCAGTTCGTGGCGGCGATGAACCCGTGCCCGTGCGGCTACCTGGGCCATCCTGACCGCCCCTGCCGCT
GCACGCCCGACCAGGTGCGGCGGTATCAGTCGCGCATCTCCGGGCCGATGCTCGACCGGATCGACCTGCAGGTGGAAGTG
CCCGCCCAGGACCAGGGCGAGATGCTCGACGGCCCGCCCGGCGAACCCAGCGCCGCGGTGCGCGAACGCGTGCTGGCGGC
GCGCATGCTGCAGCTGACCCGGCAAGGCAAGCCCAACAGCGAACTGGGCGGGCGCGAGATCGAGCAGCACTGCGTGCCGG
AGCCGCAGGCACAGGCGCTGCTGCGCGGGGCGATGACGCGGCTGGCGTGGTCGGCACGCTCCTACTTCCGTGTACTGAAG
GTGGCGCGCACGATTGCCGACCTGGAAGGCGCGGCGGTACTGAGCGCCGAGCATGTAGCCGAGGCGATCCAGTACCGGCG
CGCGCTGCGGATGGCATCCGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A388RFI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.852

99.805

0.518
  comM Vibrio campbellii strain DS40M4

51.367

99.611

0.512
  comM Haemophilus influenzae Rd KW20

49.031

100

0.492
  comM Glaesserella parasuis strain SC1401

47.876

100

0.482
  comM Legionella pneumophila str. Paris

47.961

100

0.481
  comM Legionella pneumophila strain ERS1305867

47.961

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.774

100

0.438

Multiple sequence alignment