Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   R3F78_RS43280 Genome accession   NZ_CP138301
Coordinates   8597238..8597381 (-) Length   47 a.a.
NCBI ID   WP_158332945.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain CNPSo 29     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 8592238..8602381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3F78_RS43260 (R3F78_43255) - 8592946..8593974 (-) 1029 WP_039156289.1 SAM-dependent methyltransferase -
  R3F78_RS43265 (R3F78_43260) - 8594358..8595383 (+) 1026 WP_039156287.1 hypothetical protein -
  R3F78_RS43270 (R3F78_43265) - 8595538..8596566 (+) 1029 WP_039156285.1 peptidoglycan -binding protein -
  R3F78_RS43275 (R3F78_43270) - 8596566..8597012 (+) 447 WP_039156282.1 GNAT family N-acetyltransferase -
  R3F78_RS43280 (R3F78_43275) comA/nlmT 8597238..8597381 (-) 144 WP_158332945.1 hypothetical protein Regulator
  R3F78_RS43285 (R3F78_43280) - 8597509..8598390 (-) 882 WP_039156279.1 hypothetical protein -
  R3F78_RS43290 (R3F78_43285) - 8598484..8599269 (-) 786 WP_148312428.1 trypsin-like peptidase domain-containing protein -
  R3F78_RS43295 (R3F78_43290) - 8599605..8601449 (-) 1845 WP_038933463.1 ABC transporter ATP-binding protein/permease -
  R3F78_RS43300 (R3F78_43295) rpmE 8601650..8601877 (+) 228 WP_008137002.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5152.00 Da        Isoelectric Point: 7.1631

>NTDB_id=901630 R3F78_RS43280 WP_158332945.1 8597238..8597381(-) (comA/nlmT) [Bradyrhizobium japonicum strain CNPSo 29]
MIAHRPATVLSCDRILVMDQGKIVEQGTHAELVAKNGLYARLQFEGA

Nucleotide


Download         Length: 144 bp        

>NTDB_id=901630 R3F78_RS43280 WP_158332945.1 8597238..8597381(-) (comA/nlmT) [Bradyrhizobium japonicum strain CNPSo 29]
GTGATCGCGCACCGGCCCGCCACCGTGCTGTCCTGCGACCGCATCCTGGTGATGGACCAGGGCAAGATCGTCGAGCAGGG
CACGCACGCCGAGCTCGTCGCCAAGAACGGGCTCTATGCGAGGCTGCAGTTCGAGGGCGCGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

58.537

87.234

0.511
  rcrQ Streptococcus mutans UA159

54.762

89.362

0.489
  comA Streptococcus pneumoniae TIGR4

51.22

87.234

0.447
  comA Streptococcus pneumoniae Rx1

51.22

87.234

0.447
  comA Streptococcus mitis NCTC 12261

51.22

87.234

0.447
  comA Streptococcus pneumoniae D39

51.22

87.234

0.447
  comA Streptococcus pneumoniae R6

51.22

87.234

0.447
  rcrP Streptococcus mutans UA159

47.727

93.617

0.447
  comA Streptococcus mitis SK321

48.78

87.234

0.426
  comA Streptococcus gordonii str. Challis substr. CH1

43.902

87.234

0.383