Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SC132_RS09970 Genome accession   NZ_CP138219
Coordinates   2095186..2095710 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain 19Y000373     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2090186..2100710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC132_RS09950 (SC132_09950) aphA 2090510..2091223 (+) 714 WP_022650226.1 acid phosphatase AphA -
  SC132_RS09955 (SC132_09955) - 2091336..2091752 (+) 417 WP_022650227.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SC132_RS09960 (SC132_09960) - 2091755..2092108 (+) 354 WP_003860288.1 MmcQ/YjbR family DNA-binding protein -
  SC132_RS09965 (SC132_09965) uvrA 2092112..2094934 (-) 2823 WP_197620570.1 excinuclease ABC subunit UvrA -
  SC132_RS09970 (SC132_09970) ssb 2095186..2095710 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SC132_RS09975 (SC132_09975) - 2095772..2096053 (-) 282 WP_003860282.1 YjcB family protein -
  SC132_RS09980 (SC132_09980) - 2096497..2097898 (+) 1402 Protein_1932 sensor domain-containing diguanylate cyclase -
  SC132_RS09985 (SC132_09985) - 2098164..2099729 (+) 1566 WP_045337027.1 EAL domain-containing protein -
  SC132_RS09990 (SC132_09990) soxS 2099736..2100062 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  SC132_RS09995 (SC132_09995) soxR 2100161..2100619 (+) 459 WP_058674761.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=901516 SC132_RS09970 WP_003860284.1 2095186..2095710(+) (ssb) [Enterobacter hormaechei strain 19Y000373]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=901516 SC132_RS09970 WP_003860284.1 2095186..2095710(+) (ssb) [Enterobacter hormaechei strain 19Y000373]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGTGTTGTGCTGTTTGGCAAATTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTACATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAATGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGTGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCGCAGGGTGGCAATCAGTTTAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374