Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SC318_RS25965 Genome accession   NZ_CP138214
Coordinates   5725925..5727421 (+) Length   498 a.a.
NCBI ID   WP_320429000.1    Uniprot ID   -
Organism   Pseudomonas sp. MUP55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5720925..5732421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC318_RS25935 (SC318_25935) - 5721244..5721939 (+) 696 WP_320428967.1 HAD-IA family hydrolase -
  SC318_RS25940 (SC318_25940) sutA 5722132..5722464 (-) 333 WP_320428968.1 transcriptional regulator SutA -
  SC318_RS25945 (SC318_25945) - 5722566..5722991 (-) 426 WP_306490857.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SC318_RS25950 (SC318_25950) - 5723203..5724543 (-) 1341 WP_320428969.1 ammonium transporter -
  SC318_RS25955 (SC318_25955) glnK 5724579..5724917 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  SC318_RS25960 (SC318_25960) - 5725339..5725602 (+) 264 WP_320428999.1 accessory factor UbiK family protein -
  SC318_RS25965 (SC318_25965) comM 5725925..5727421 (+) 1497 WP_320429000.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SC318_RS25970 (SC318_25970) - 5727454..5729430 (-) 1977 WP_320429001.1 methyl-accepting chemotaxis protein -
  SC318_RS25975 (SC318_25975) - 5729608..5730528 (-) 921 WP_320429002.1 LysR substrate-binding domain-containing protein -
  SC318_RS25980 (SC318_25980) - 5730680..5732083 (+) 1404 WP_320429003.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53507.67 Da        Isoelectric Point: 7.3662

>NTDB_id=901474 SC318_RS25965 WP_320429000.1 5725925..5727421(+) (comM) [Pseudomonas sp. MUP55]
MSLAIVHSRAQIGVEAPVVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTLIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYTSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGDPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALSPAQQT
GDNTAQTAALVADARERQQQRQGCANAFLDLPGLREYCTLTKADESWLENACERLTLSLRAAHRLLKVARTLADLEQTED
IARHHLQEALQYRPAVIN

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=901474 SC318_RS25965 WP_320429000.1 5725925..5727421(+) (comM) [Pseudomonas sp. MUP55]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATCGGCGTTGAAGCCCCCGTCGTCACGGTTGAAGTGCATATGGCCAA
TGGCTTGCCATCCCTGACCCTGGTGGGTTTGCCGGAAACCGCAGTAAAGGAAAGCAAGGACCGCGTTCGCAGCGCCATTC
TCAACTCGGCCCTGCAATATCCGGCGCGTCGCATCACGCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATCTGGCGATAGCCCTGGGGATCCTCGCGGCCAGCGTGCAGGTGCCCGCATTGATGCTTGATGATGTCGAGTGTCT
GGGCGAGTTGGCGCTGTCCGGCGAGGTGCGTGCGGTCAAAGGTGTGTTGCCGGCCGCCCTGGCGGCGCGCAAGGCCGGTC
GCACCTTGATAGTGCCCAGGGCGAACGCCGAGGAAGCGTGCCTGGCATCAGGGCTGAAGGTGATTGCTGTGGATCATCTG
CTGCAGGTAGTGGCGCATTTGAACGGGCACGTGCCGATCGAGCCCTACACGTCAGACGGCTTGCTGTACTTGAACAAACC
TTACCCGGACCTCAGTGAAGTACAGGGCCAACTGGCCGCCAAGCGTGCCTTGCTGATTGCCGCAGCGGGGGCACACAACC
TGTTGTTCAGCGGGCCGCCCGGTACCGGCAAAACCTTGCTCGCCAGCCGCCTGCCGGGGTTGCTGCCACCGCTCAGCGAG
CAGGAAGCGCTGGAGGTTGCGGCGATTCAATCCGTGGTCAGCCTGGCACCGTTGAGCCATTGGCCGCACCGGCCGTTCCG
CCAGCCGCACCACTCGGCCTCAGGCCCGGCGCTGGTCGGCGGAGGATCGAAGCCGCAGCCGGGGGAAATCACCCTGGCTC
ACCACGGCGTGCTGTTTCTGGACGAGCTGCCAGAGTTCGACCGCAAAGTGCTGGAGGTGCTGCGCGAGCCCCTCGAGTCG
GGACATATTGTGATTTCCCGCGCGCGGGACCGGGTGAGTTTTCCGGCGCGCTTCCAACTGGTCGCGGCGATGAACCCCTG
CCCTTGCGGTTATATGGGCGACCCCAGCGGCCGTTGCCGTTGCACGCCGGAACAGATTCAACGCTATCGCAACAAGCTCT
CGGGGCCACTGCTGGACCGGATCGATCTACACCTGACGGTAGCGCGCGAAGCCACGGCACTGAGCCCGGCCCAACAGACC
GGCGACAACACCGCGCAAACCGCAGCCCTGGTGGCCGACGCGCGAGAGCGCCAGCAACAGCGCCAGGGTTGCGCCAACGC
GTTCCTCGATCTGCCGGGGCTGCGCGAGTACTGCACGCTGACGAAGGCCGATGAAAGCTGGCTGGAAAACGCATGCGAGC
GACTGACGCTGTCGTTGCGGGCGGCTCATCGGCTGCTCAAGGTGGCGCGCACTTTGGCCGACCTCGAACAAACGGAAGAC
ATCGCTCGCCACCATCTGCAAGAAGCCTTGCAGTACCGTCCGGCGGTGATCAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Vibrio campbellii strain DS40M4

56.566

99.398

0.562
  comM Glaesserella parasuis strain SC1401

55.489

100

0.558
  comM Haemophilus influenzae Rd KW20

54.672

100

0.552
  comM Legionella pneumophila str. Paris

52

100

0.522
  comM Legionella pneumophila strain ERS1305867

52

100

0.522
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.322

100

0.468