Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R6238_RS13840 Genome accession   NZ_CP138212
Coordinates   3256451..3257944 (-) Length   497 a.a.
NCBI ID   WP_003413980.1    Uniprot ID   A0AAJ4AXW6
Organism   Pseudomonas syringae pv. syringae strain pss-2019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3251451..3262944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6238_RS13830 - 3253204..3254601 (+) 1398 WP_003425915.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  R6238_RS13835 - 3255074..3256381 (+) 1308 WP_003313973.1 CitMHS family transporter -
  R6238_RS13840 comM 3256451..3257944 (-) 1494 WP_003413980.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R6238_RS13845 - 3258123..3258665 (+) 543 WP_024959758.1 GNAT family N-acetyltransferase -
  R6238_RS13850 - 3258679..3258810 (-) 132 Protein_2719 oxidoreductase -
  R6238_RS13855 - 3258809..3259061 (-) 253 Protein_2720 magnesium chelatase domain-containing protein -
  R6238_RS13860 - 3259358..3262738 (+) 3381 WP_024959757.1 toxin VasX -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53026.80 Da        Isoelectric Point: 7.3250

>NTDB_id=901445 R6238_RS13840 WP_003413980.1 3256451..3257944(-) (comM) [Pseudomonas syringae pv. syringae strain pss-2019]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQVPLVALQDVECLGELALSGAIRPIQGVLPAALAARAAERTLIIPAVNAEEACLASGLRVIAVSHL
LELVAHFNGRTVIAPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQVPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSTEQVQRYRNKLSGPLLDRIDLHLTVAREATALNPDPTT
SENTASAAAVVAEARDRQQRRQGCANAFLDLPGLREYCALSSVDESWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
INRSHLAEALQYRPSTN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=901445 R6238_RS13840 WP_003413980.1 3256451..3257944(-) (comM) [Pseudomonas syringae pv. syringae strain pss-2019]
ATGTCGCTGGCTATCGTCCATAGTCGTGCCCAGGTCGGGGTGGAAGCCCCGGCGGTTACTGTTGAAGCGCATCTGGCCAA
CGGCCTGCCGGCCCTGACGCTGGTGGGGTTGCCGGAGGGGGCGGTCAAGGAGAGCAAGGACCGGGTGCGCAGTGCCATTC
TCAATTCCGGGCTGGATTTTCCGGCGCGGCGGATCACGCTCAACCTGGCCCCGGCTGATTTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGTTTGCTGGCCGCCAGCGGGCAGGTGCCGCTGGTGGCGTTGCAGGACGTTGAATGCTT
GGGCGAGTTGGCGTTGTCGGGGGCGATTCGGCCGATTCAGGGTGTGCTGCCCGCTGCACTCGCGGCGCGTGCGGCGGAGC
GGACGCTGATCATCCCGGCGGTGAACGCCGAGGAAGCGTGCCTGGCGTCGGGGCTGCGGGTGATTGCGGTGAGCCACTTG
CTGGAGCTGGTCGCGCATTTCAACGGGCGCACGGTGATTGCGCCGTATCAGTCCAGTGGTCTGCTGCATCAGCCCAAGCC
GTATCCCGACCTTAGCGAAGTGCAGGGCCAGACCGCCGCGAAGCGTGCCTTGGTGATTGCCGCTGCGGGGGCGCATAACC
TGCTGTTCAGCGGGCCGCCCGGCACTGGCAAGACGCTGCTCGCCAGTCGCCTGCCGGGTTTGTTGCCTCCGCTGGACGAG
CATGAAGCGCTGGAGGTAGCGGCGATTCAGTCGGTCGCCAGCCAGGTGCCGCTGACCAGTTGGCCGCAGCGGCCGTTTCG
GCAGCCGCATCACTCGGCGTCCGGGCCGGCGTTGGTGGGCGGTGGCAGTCGTCCGCAACCTGGCGAGATCACGTTGGCGC
ATCACGGTGTTCTATTCCTTGATGAGCTGCCGGAGTTTGATCGCCGCGTGCTGGAGGTTTTGCGCGAGCCGCTGGAGTCC
GGGCATATCGTGATTTCCCGGGCGCGGGATCGCGTGCGCTTTCCGGCGCGTTTCCAGTTGGTGGCGGCGATGAATCCGTG
TCCCTGTGGCTATCTCGGTGAGCCGACCGGGCGCTGCCGCTGTTCCACCGAGCAGGTGCAGCGCTATCGCAACAAGTTGT
CCGGCCCGCTGCTGGACCGGATCGACCTGCACCTGACCGTCGCTCGCGAAGCCACCGCCCTCAACCCTGACCCCACCACC
AGTGAAAACACTGCCAGTGCCGCAGCCGTGGTCGCTGAGGCGAGAGACCGTCAGCAACGCCGTCAGGGCTGTGCCAATGC
GTTTCTCGATCTGCCAGGGCTGCGCGAGTATTGCGCACTGTCCAGTGTCGACGAAAGCTGGCTGGAGACGGCGTGTGAGC
GTCTGACCCTGTCGTTGCGCTCGGCGCATCGATTGCTGAAGGTGGCGCGGACGTTGGCGGATCTGGAGCAGGTGGACGCG
ATCAACCGCAGCCATCTGGCCGAGGCCTTGCAGTATCGGCCTTCAACCAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

53.8

100

0.541
  comM Vibrio campbellii strain DS40M4

53.939

99.598

0.537
  comM Haemophilus influenzae Rd KW20

53

100

0.533
  comM Legionella pneumophila str. Paris

48.713

100

0.495
  comM Legionella pneumophila strain ERS1305867

48.713

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459