Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SBP18_RS02240 Genome accession   NZ_CP138198
Coordinates   455218..456750 (-) Length   510 a.a.
NCBI ID   WP_011462796.1    Uniprot ID   Q221T0
Organism   Rhodoferax ferrireducens strain YZ-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 450218..461750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBP18_RS02230 (SBP18_02230) - 450378..452672 (+) 2295 WP_318666700.1 bifunctional diguanylate cyclase/phosphodiesterase -
  SBP18_RS02235 (SBP18_02235) - 452684..455221 (+) 2538 WP_318666701.1 chemotaxis protein CheW -
  SBP18_RS02240 (SBP18_02240) comM 455218..456750 (-) 1533 WP_011462796.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SBP18_RS02245 (SBP18_02245) glnK 457008..457346 (+) 339 WP_011462797.1 P-II family nitrogen regulator -
  SBP18_RS02250 (SBP18_02250) - 457381..458934 (+) 1554 WP_318666702.1 ammonium transporter -
  SBP18_RS02255 (SBP18_02255) - 459342..459812 (-) 471 WP_318666703.1 hypothetical protein -
  SBP18_RS02260 (SBP18_02260) - 460038..460613 (-) 576 WP_318666704.1 hypothetical protein -
  SBP18_RS02265 (SBP18_02265) - 460643..461341 (-) 699 WP_318666705.1 hypothetical protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 53837.84 Da        Isoelectric Point: 8.4980

>NTDB_id=901286 SBP18_RS02240 WP_011462796.1 455218..456750(-) (comM) [Rhodoferax ferrireducens strain YZ-1]
MSLSLVQSRALLGLDASAVTVEVHLANGLPSFTLVGLADVEVKEARERVRSAIQNSGLEFPHNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLAGYEFAGELSLSGELRPVRGALAMSLALHASRVVTQLVLPPGSAEEAALVPDAQVYSA
RHLLDVVQHFLPQDDNAPPAEPAAGWSRVTAAPQPELVRYLDLADVKGQLGAKRALEIAAAGGHSLLLMGPPGSGKSMLA
QRFAGLLPTMTTLEALQSAAVASLGGRFSLDKWAQRPTCSPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDELPEFPR
AALEALREPLESGVITISRAARRAEFPARFQLIGAMNPCPCGYLGSKQKVCRCTPDQVARYQSKLSGPLVDRIDLHVEVP
ALPAADLLQAAAGEATAVIRARCTAARERAMARQGKANQALQGQEIDHYLLLDDAAAKFLNLAAARLGWSARSTHRALKV
ARTIADLAGASSTQVTHVAEAMQYRRALRA

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=901286 SBP18_RS02240 WP_011462796.1 455218..456750(-) (comM) [Rhodoferax ferrireducens strain YZ-1]
ATGAGTCTGTCTTTGGTGCAAAGCCGTGCGCTGCTGGGCCTGGACGCGTCGGCGGTCACGGTGGAGGTTCACCTGGCCAA
TGGCCTGCCCAGCTTCACGCTGGTCGGCTTGGCCGACGTTGAGGTGAAGGAGGCGCGCGAGCGGGTGCGCTCTGCGATTC
AAAATTCCGGGCTGGAGTTTCCCCACAACAAGCGCATCACGGTCAATCTGGCGCCCGCCGACCTGCCCAAGGATTCGGGC
CGCTTTGACTTGCCGATTGCGTTGGGCATTCTGGCCGCCAGTGGCCAGATCGATGCGGCCCGTCTGGCGGGCTATGAATT
CGCCGGCGAGTTGTCGCTGTCGGGCGAGCTGCGCCCGGTGCGCGGCGCGCTGGCCATGAGCCTGGCTTTGCACGCCAGCC
GGGTGGTGACGCAACTGGTGTTGCCGCCCGGCAGCGCCGAAGAAGCCGCGCTGGTGCCCGACGCCCAGGTCTATAGCGCC
CGCCATCTGCTTGATGTGGTGCAGCATTTTTTGCCGCAGGACGACAACGCGCCGCCAGCGGAGCCCGCGGCGGGCTGGTC
GCGGGTCACGGCCGCGCCCCAGCCCGAGCTGGTACGGTATCTGGATCTGGCCGATGTCAAAGGTCAACTGGGCGCCAAAC
GCGCCCTGGAGATTGCCGCTGCTGGCGGCCACAGTCTGCTGTTGATGGGACCGCCCGGCTCGGGCAAGTCGATGCTGGCG
CAACGCTTTGCCGGCCTGCTGCCCACCATGACGACCCTTGAGGCGCTGCAAAGCGCTGCCGTGGCCAGCCTGGGCGGGCG
CTTTTCGCTGGACAAGTGGGCGCAGCGGCCCACTTGCAGCCCGCACCACACCGCCAGCGCCGTGGCACTGGTGGGCGGCG
GTTCACCCCCGCGGCCCGGCGAAATTTCACTGGCGCACCATGGCGTGCTGTTCCTGGACGAATTGCCAGAATTCCCCCGT
GCCGCGCTGGAGGCGCTGCGCGAACCGCTGGAGTCGGGGGTGATCACGATTTCGCGCGCGGCACGACGGGCCGAATTTCC
GGCCCGCTTTCAGCTGATTGGCGCCATGAACCCCTGCCCTTGCGGCTATCTGGGATCAAAGCAAAAGGTCTGCCGCTGCA
CACCCGACCAGGTGGCGCGTTACCAGAGCAAGCTGAGCGGCCCGCTGGTGGATCGTATTGACCTGCATGTGGAAGTGCCG
GCCTTGCCGGCGGCGGACTTGCTGCAGGCAGCAGCCGGTGAAGCCACCGCCGTCATCCGCGCGCGTTGCACGGCCGCGCG
CGAGCGCGCCATGGCACGCCAGGGCAAGGCGAACCAGGCGCTGCAGGGACAGGAAATAGACCACTATTTGTTGCTTGACG
ATGCCGCCGCCAAGTTTCTCAACCTGGCGGCCGCGCGCCTGGGCTGGTCGGCCCGCAGCACACACCGGGCCCTTAAAGTG
GCCCGCACCATCGCCGACCTGGCCGGGGCAAGCAGCACCCAGGTGACACACGTGGCCGAGGCGATGCAATACCGGCGTGC
GCTGCGCGCCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-405)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q221T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.346

99.608

0.531
  comM Haemophilus influenzae Rd KW20

52.539

100

0.527
  comM Glaesserella parasuis strain SC1401

52.456

99.804

0.524
  comM Vibrio campbellii strain DS40M4

51.272

100

0.514
  comM Legionella pneumophila str. Paris

49.416

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.416

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

99.216

0.429