Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   R6I06_RS13290 Genome accession   NZ_CP137711
Coordinates   2528667..2529098 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis isolate FELIX_MS886     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2523667..2534098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I06_RS13240 (R6I06_13240) sinI 2523864..2524037 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  R6I06_RS13245 (R6I06_13245) sinR 2524071..2524406 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  R6I06_RS13250 (R6I06_13250) tasA 2524496..2525281 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  R6I06_RS13255 (R6I06_13255) sipW 2525345..2525917 (-) 573 WP_003246088.1 signal peptidase I SipW -
  R6I06_RS13260 (R6I06_13260) tapA 2525901..2526662 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  R6I06_RS13265 (R6I06_13265) yqzG 2526934..2527260 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  R6I06_RS13270 (R6I06_13270) spoIITA 2527302..2527481 (-) 180 WP_003230176.1 YqzE family protein -
  R6I06_RS13275 (R6I06_13275) comGG 2527552..2527926 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  R6I06_RS13280 (R6I06_13280) comGF 2527927..2528310 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  R6I06_RS13285 (R6I06_13285) comGE 2528336..2528683 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  R6I06_RS13290 (R6I06_13290) comGD 2528667..2529098 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  R6I06_RS13295 (R6I06_13295) comGC 2529088..2529384 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  R6I06_RS13300 (R6I06_13300) comGB 2529398..2530435 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  R6I06_RS13305 (R6I06_13305) comGA 2530422..2531492 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  R6I06_RS13310 (R6I06_13310) corA 2531904..2532857 (-) 954 WP_032723504.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=900127 R6I06_RS13290 WP_004398628.1 2528667..2529098(-) (comGD) [Bacillus subtilis isolate FELIX_MS886]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=900127 R6I06_RS13290 WP_004398628.1 2528667..2529098(-) (comGD) [Bacillus subtilis isolate FELIX_MS886]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1