Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   R6I06_RS13245 Genome accession   NZ_CP137711
Coordinates   2524071..2524406 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis isolate FELIX_MS886     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2519071..2529406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I06_RS13225 (R6I06_13225) gcvT 2519663..2520751 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  R6I06_RS13230 (R6I06_13230) hepAA 2521193..2522866 (+) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  R6I06_RS13235 (R6I06_13235) yqhG 2522887..2523681 (+) 795 WP_003230200.1 YqhG family protein -
  R6I06_RS13240 (R6I06_13240) sinI 2523864..2524037 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  R6I06_RS13245 (R6I06_13245) sinR 2524071..2524406 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  R6I06_RS13250 (R6I06_13250) tasA 2524496..2525281 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  R6I06_RS13255 (R6I06_13255) sipW 2525345..2525917 (-) 573 WP_003246088.1 signal peptidase I SipW -
  R6I06_RS13260 (R6I06_13260) tapA 2525901..2526662 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  R6I06_RS13265 (R6I06_13265) yqzG 2526934..2527260 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  R6I06_RS13270 (R6I06_13270) spoIITA 2527302..2527481 (-) 180 WP_003230176.1 YqzE family protein -
  R6I06_RS13275 (R6I06_13275) comGG 2527552..2527926 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  R6I06_RS13280 (R6I06_13280) comGF 2527927..2528310 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  R6I06_RS13285 (R6I06_13285) comGE 2528336..2528683 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  R6I06_RS13290 (R6I06_13290) comGD 2528667..2529098 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  R6I06_RS13295 (R6I06_13295) comGC 2529088..2529384 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=900123 R6I06_RS13245 WP_003226345.1 2524071..2524406(+) (sinR) [Bacillus subtilis isolate FELIX_MS886]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=900123 R6I06_RS13245 WP_003226345.1 2524071..2524406(+) (sinR) [Bacillus subtilis isolate FELIX_MS886]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1