Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABEF00_RS13820 Genome accession   NZ_CP156718
Coordinates   2850505..2851134 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain EC596     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2845505..2856134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF00_RS13805 helD 2845747..2847801 (-) 2055 WP_196607574.1 DNA helicase IV -
  ABEF00_RS13810 yccF 2847924..2848370 (+) 447 WP_001261231.1 YccF domain-containing protein -
  ABEF00_RS13815 yccS 2848380..2850542 (+) 2163 WP_000875044.1 YccS family putative transporter -
  ABEF00_RS13820 sxy/tfoX 2850505..2851134 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABEF00_RS13825 sulA 2851353..2851862 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABEF00_RS13830 ompA 2852219..2853271 (+) 1053 WP_000750419.1 porin OmpA -
  ABEF00_RS13835 matP 2853346..2853798 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ABEF00_RS13840 ycbZ 2853984..2855744 (+) 1761 WP_196607573.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=900129 ABEF00_RS13820 WP_000839153.1 2850505..2851134(-) (sxy/tfoX) [Escherichia coli strain EC596]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=900129 ABEF00_RS13820 WP_000839153.1 2850505..2851134(-) (sxy/tfoX) [Escherichia coli strain EC596]
ATGAAAAGTCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1