Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LDO37_RS18280 Genome accession   NZ_AP025144
Coordinates   4088755..4090278 (-) Length   507 a.a.
NCBI ID   WP_126609767.1    Uniprot ID   A0AAV5NPK3
Organism   Vibrio penaeicida strain IFO 15640T     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4083755..4095278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO37_RS18260 - 4084930..4085916 (+) 987 WP_126609770.1 serine/threonine protein kinase -
  LDO37_RS18265 - 4085959..4086561 (+) 603 WP_101115256.1 thiol:disulfide interchange protein DsbA/DsbL -
  LDO37_RS18270 - 4086636..4087520 (-) 885 WP_126609769.1 acyltransferase -
  LDO37_RS18275 - 4087721..4088695 (+) 975 WP_185829929.1 DUF2860 family protein -
  LDO37_RS18280 comM 4088755..4090278 (-) 1524 WP_126609767.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LDO37_RS18285 ilvG 4090738..4092384 (+) 1647 WP_126609766.1 acetolactate synthase 2 catalytic subunit -
  LDO37_RS18290 ilvM 4092384..4092668 (+) 285 WP_104398593.1 acetolactate synthase 2 small subunit -
  LDO37_RS18295 ilvE 4092684..4093649 (+) 966 WP_126609765.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54972.09 Da        Isoelectric Point: 8.7010

>NTDB_id=89976 LDO37_RS18280 WP_126609767.1 4088755..4090278(-) (comM) [Vibrio penaeicida strain IFO 15640T]
MALAIIHSRACVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSGFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIAITKLGQIEFIGELALSGELRAVKGVLPAALAANKSNRCLVVPDTNGDQAALVGANTHKSAANL
LDVCADLCGQKSLSLFQTPELTVTQESSRCLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPDMDE
QEAMETASVASLTQQEINQYNWRKRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYKGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTQVVKQRVNFARERMQSRNGKVNALLGTREIDKYCPLQKQDAEFLENALHQLGLSIRAYHRIIKVARTIADLSGSRN
IERPHIAEALGYRAMDRLMKQLTAQAA

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=89976 LDO37_RS18280 WP_126609767.1 4088755..4090278(-) (comM) [Vibrio penaeicida strain IFO 15640T]
ATGGCTTTAGCAATTATTCACAGCCGCGCGTGTGTAGGAGTGGAAGCTCCAGAGGTGACGGTTGAAGTGCACATCAGCAA
TGGTATGCCTGGTTTTACTTTGGTGGGCTTGCCTGAAACAACGGTGAAAGAGTCGCGTGATAGAGTGCGCAGCGCCATTA
TCAATTCTGGCTTCGAATTTCCAGCCAAGCGTATAACGGTGAACTTAGCCCCAGCGGATTTGCCAAAAGAAGGCGGCCGC
TTTGATTTGCCTATTGCGCTCGGGATATTGGCGGCATCAGAACAAATCGCCATCACTAAGCTGGGGCAAATAGAGTTTAT
TGGCGAACTTGCTCTGTCTGGTGAATTGAGAGCAGTCAAAGGCGTGTTACCAGCTGCGCTAGCGGCTAATAAGAGTAACC
GTTGTTTAGTCGTACCCGATACCAATGGTGATCAAGCCGCATTGGTTGGGGCAAATACACATAAATCGGCAGCCAACTTG
CTGGACGTATGCGCCGATTTATGTGGTCAAAAATCCCTTTCTTTATTTCAGACTCCCGAACTCACTGTTACCCAAGAATC
ATCTCGTTGTTTACAAGACATTATTGGTCAGCAGCAAGGTAAACGTGCGCTAGAGATAGCTGCTGCAGGTAACCATAACC
TTTTGTTCCTCGGTCCTCCGGGAACAGGAAAAACCATGCTGGCATCTCGATTGCGTGATTTGTTGCCCGATATGGATGAA
CAAGAAGCGATGGAAACGGCGTCGGTTGCCTCGCTTACTCAGCAGGAAATCAATCAATATAACTGGAGGAAACGACCTTT
TCGTTCTCCTCACCATTCCAGTTCCATGGCGGCTCTGGTTGGCGGAGGCTCGATTCCCAGACCAGGTGAGATCTCATTAG
CGCACAATGGGCTTCTCTTTCTTGATGAAATGCCAGAATTTGAGCGAAAGGTGCTGGATTCATTACGCGAACCTCTAGAG
TCAGGAGAAATCATCATCTCGCGTGCAGCGGGTAAAACGCGTTTTCCAGCTCGCTTCCAGCTAGTTGGAGCGCTGAATCC
AAGCCCGACAGGGTATTACAAAGGGAATCAAGCGAGAGCGAATCCTCAGGCCATACTCCGGTATTTAGGGCGTCTATCTG
GTCCACTGCTCGATAGGTTCGATATGTCTTTAGAAATCCCTGCGCTGCCAAAAGGTACGCTTTCTGAAGGTGGTGATCGT
GGTGAACCTACTCAGGTAGTAAAACAAAGAGTGAATTTTGCGCGTGAGAGGATGCAATCGCGCAATGGGAAAGTAAACGC
ATTGCTAGGGACGCGTGAGATCGACAAATATTGCCCATTGCAAAAACAAGATGCGGAGTTTCTTGAAAACGCGCTGCACC
AGCTTGGTTTATCTATTCGAGCGTACCACCGGATTATCAAAGTGGCTCGTACCATTGCCGATTTGTCGGGGAGCCGGAAT
ATAGAGCGCCCGCATATTGCCGAAGCCTTGGGATATCGAGCCATGGATAGGCTCATGAAGCAGCTTACCGCGCAAGCGGC
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

83.992

99.803

0.838
  comM Vibrio cholerae strain A1552

83.366

99.606

0.83
  comM Haemophilus influenzae Rd KW20

63.511

100

0.635
  comM Glaesserella parasuis strain SC1401

63.137

100

0.635
  comM Legionella pneumophila str. Paris

50.101

98.028

0.491
  comM Legionella pneumophila strain ERS1305867

50.101

98.028

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment